Spring challenge release (python assembler version)

Up-to date version with new VDJdb assembly scripts. Fixed some bugs and typos in older datasets. Multiple new datasets added.

Challenge pre-release

Up-to date version with new VDJdb assembly scripts. Fixed some bugs and typos in older datasets. Multiple new datasets added.

First Python Version Release

VDJdb score now reflects the generation probability of particular TCR. Fisrst version built entierly on Python.

Hotfix#1 for 2024 summer release

Fixing some typos, adding some papers

Summertime-summertime 2024 release

Content updates accumulated from the last release, many new neoantigens

Celebrate the summer 2023 release

Content updates accumulated from the last release, various

[CONTENT, INFRASTRUCTURE] New studies & docker

Added records:

• PMID:34811538 - TAAs
• PMID:33945786 - SARS-CoV-2/HCoV-HKU1 cross-reactive
• PMID:34880106 - many HIV sequences
• PMID:34793243 - lots of SARS-CoV-2 epitopes/TCRs, similar to 10X compendium
• Updated PDB list

Infrastructure:

• On the way to Docker for database build/release

[INFRASTRUCTURE] VDJdb 2022 infrastructure update

• Optimize and improve VDJdb building
• Generate fancier comprehensive summary statistics
• Link to updated vdjdb-motifs motif inference scripts
• Cleanup, minor fixes, etc

[CONTENT] 2021-2022 winter dataset pack

More COVID-19 epitopes, HCV-specific TCRs and tumor antigen-reactive TCRs

[CONTENT] September COVID-19 release

A number of datasets from published studies, preprints and private communications with SARS-CoV-2-specific TCRs.