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1
vdj-10x
vdj-10x
scRNA-seq dataset prepared using 10X Genomics kit (or similar) with TCR/BCR
1
vdj-10x-immudex
vdj-10x-immudex
scRNA-seq dataset prepared using 10X Genomics kit (or similar) + UMI-tagged MHC-multimers
1
vdj-db-alternative-datasets
vdj-db-alternative-datasets
vdjdb-build-infrastructure
vdjdb-build-infrastructure
VDJdb aggregation, compilation and proofreading infrastructure development
2
vdjdb-build-summary
vdjdb-build-summary
VDJdb summary report generation infrastructure development
1
vdjdb-maintainance
vdjdb-maintainance
Critical issues requiring complex maintenance works
2
vdjdb-records-associations
vdjdb-records-associations
Inferred (directly or indirectly) antigen receptor:condition associations.
6
vdjdb-records-communication
vdjdb-records-communication
Dataset sent by internal or external collaborators
1
vdjdb-records-dataset
vdjdb-records-dataset
A dataset of antigen receptors and cognate antigens, e.g. publicly available 10X+Immudex assay data
1
vdjdb-records-formatting&proofreading
vdjdb-records-formatting&proofreading
Typos and errors that need to be fixed in one or multiple VDJdb records
14
vdjdb-records-meta-paper
vdjdb-records-meta-paper
A paper listing several studies and datasets that can be imported into VDJdb
1
vdjdb-records-other-db
vdjdb-records-other-db
Antigen specificity information present in public databases, e.g. genbank or PDB
vdjdb-records-paper
vdjdb-records-paper
A published study listing TCRs and cognate antigens with PubMed ID
46
vdjdb-records-paper-pending
vdjdb-records-paper-pending
A placeholder for paper yet to be published that will be incorporated into VDJdb
1
vdjdb-records-preprint
vdjdb-records-preprint
A study listing TCRs and cognate antigens available on arxiv/biorxiv
vdjdb-typos
vdjdb-typos
Minor typos to fix