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Issues list

pgen as vdjdb score vdjdb-build-infrastructure VDJdb aggregation, compilation and proofreading infrastructure development
#395 opened Oct 29, 2024 by LuppovDaniil
@LuppovDaniil
PMID:39286976 vdjdb-records-paper A published study listing TCRs and cognate antigens with PubMed ID
#392 opened Sep 23, 2024 by LuppovDaniil
@LuppovDaniil
PMID: 39258910
#391 opened Sep 17, 2024 by LuppovDaniil
duplicated dataset duplicate A duplicate issue
#390 opened Sep 16, 2024 by LuppovDaniil
VDJ genes nomenclature vdjdb-build-infrastructure VDJdb aggregation, compilation and proofreading infrastructure development
#389 opened Sep 10, 2024 by LuppovDaniil
@LuppovDaniil
PMID:36778273 vdjdb-records-paper A published study listing TCRs and cognate antigens with PubMed ID
#388 opened Aug 29, 2024 by LuppovDaniil
PMID:38744246 vdj-10x-immudex scRNA-seq dataset prepared using 10X Genomics kit (or similar) + UMI-tagged MHC-multimers vdjdb-records-associations Inferred (directly or indirectly) antigen receptor:condition associations.
#376 opened Jun 9, 2024 by mikessh
PMID:38762592 vdj-10x scRNA-seq dataset prepared using 10X Genomics kit (or similar) with TCR/BCR vdjdb-records-associations Inferred (directly or indirectly) antigen receptor:condition associations.
#375 opened Jun 9, 2024 by mikessh
Re-evaluate HLA restriction vdjdb-build-summary VDJdb summary report generation infrastructure development vdjdb-records-formatting&proofreading Typos and errors that need to be fixed in one or multiple VDJdb records
#372 opened Jun 1, 2024 by mikessh
Associations from previously published studies, aggregated and listed elsewhere vdjdb-records-associations Inferred (directly or indirectly) antigen receptor:condition associations. vdjdb-records-meta-paper A paper listing several studies and datasets that can be imported into VDJdb
#371 opened Jun 1, 2024 by mikessh
PMID:38571941 vdjdb-records-associations Inferred (directly or indirectly) antigen receptor:condition associations. vdjdb-records-paper A published study listing TCRs and cognate antigens with PubMed ID
#370 opened Jun 1, 2024 by mikessh
antigen.gene / antigen.species mix up for some human epitopes vdjdb-records-formatting&proofreading Typos and errors that need to be fixed in one or multiple VDJdb records
#368 opened May 30, 2024 by JamieHeather
@LuppovDaniil
1
PMID:38508137 vdjdb-records-paper A published study listing TCRs and cognate antigens with PubMed ID
#367 opened May 30, 2024 by mikessh
@mikessh @LuppovDaniil
Structural data update vdjdb-records-dataset A dataset of antigen receptors and cognate antigens, e.g. publicly available 10X+Immudex assay data vdjdb-records-formatting&proofreading Typos and errors that need to be fixed in one or multiple VDJdb records
#365 opened May 25, 2024 by mikessh
Discrepancies in structure.id in 4 entries vdjdb-records-formatting&proofreading Typos and errors that need to be fixed in one or multiple VDJdb records
#360 opened Mar 20, 2024 by mm523
PMID:33444574 vdjdb-records-associations Inferred (directly or indirectly) antigen receptor:condition associations. vdjdb-records-paper A published study listing TCRs and cognate antigens with PubMed ID
#353 opened Jul 6, 2023 by drlcook
Replace DOI and github links with PMID vdjdb-records-formatting&proofreading Typos and errors that need to be fixed in one or multiple VDJdb records
#347 opened Mar 30, 2023 by mikessh
@mikessh
PMID:32494613 vdjdb-records-paper A published study listing TCRs and cognate antigens with PubMed ID
#329 opened Oct 3, 2021 by iziziz
TRAJ24*01 vs TRAJ24*02 vdjdb-maintainance Critical issues requiring complex maintenance works vdjdb-records-formatting&proofreading Typos and errors that need to be fixed in one or multiple VDJdb records
#327 opened Sep 6, 2021 by mikessh
PMID:31415240 vdjdb-records-paper A published study listing TCRs and cognate antigens with PubMed ID
#307 opened Sep 15, 2019 by iziziz
Check nomenclature in PMID:12466894 vdjdb-records-formatting&proofreading Typos and errors that need to be fixed in one or multiple VDJdb records
#306 opened Aug 14, 2019 by ustervbo
@ustervbo
PMID:17404267 vdjdb-records-paper A published study listing TCRs and cognate antigens with PubMed ID
#305 opened Aug 8, 2019 by ustervbo
@ustervbo
PMID:16506290 vdjdb-records-paper A published study listing TCRs and cognate antigens with PubMed ID
#304 opened Aug 8, 2019 by ustervbo
@ustervbo
Check nomenclature in PMID:11884484 vdjdb-records-formatting&proofreading Typos and errors that need to be fixed in one or multiple VDJdb records
#303 opened Aug 6, 2019 by ustervbo
@ustervbo
Check nomenclature in PMID:15753288 vdjdb-records-formatting&proofreading Typos and errors that need to be fixed in one or multiple VDJdb records
#302 opened Aug 6, 2019 by ustervbo
@ustervbo
ProTip! Exclude everything labeled bug with -label:bug.