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PDB ID data
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@LuppovDaniil
LuppovDaniil committed Jul 22, 2024
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14 changes: 14 additions & 0 deletions chunks/PDB_Database.txt
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Expand Up @@ -262,3 +262,17 @@ chunk.id cdr3.alpha v.alpha j.alpha cdr3.beta v.beta d.beta j.beta species mhc.a
260 CLVGGLARDMRF TRAV4*01 TRAJ43*01 CSVALGSDTGELFF TRBV29-1*01 TRBJ2-2*01 HomoSapiens HLA-DQA1*05 HLA-DQB1*02 MHCII LQPFPQPELPYGSGGS DQ2-GLIA-OMEGA1 Homo sapiens https://github.com/antigenomics/vdjdb-db/issues/215 7sg1
261 CLVGGLARDMRF TRAV4*01 TRAJ43*01 CSVALGSDTGELFF TRBV29-1*01 TRBJ2-2*01 HomoSapiens HLA-DQA1*05 HLA-DQB1*02 MHCII LQPFPQPELPYGSGGS DQ2-GLIA-OMEGA1 Homo sapiens https://github.com/antigenomics/vdjdb-db/issues/215 7sg2
262 CLVGGAYTGGFKTIF TRAV4*01 TRAJ9*01 CASSLVAETYEQYF TRBV11-2*01 TRBJ2-7*01 HomoSapiens HLA-A*03:01 B2M MHCI ALHGGWTTK PIK3CA HomoSapiens https://github.com/antigenomics/vdjdb-db/issues/215 7rrg
263 CAVSLGTGAGSYQLTF TRAV21 TRAJ28 CASSVGLYSTDTQYF TRBV9 TRBJ2-3 HomoSapiens HLA-B*27:05 B2M MHCI TRLALIAPK PRPF3 HomoSapiens PMID:36477533 antigen-loaded-targets yes amplicon-seq tetramer-stain Ankylosing Spondylitis AS3.1 synovial fluid 7n2s
264 CAVLSPVQETSGSRLTF TRAV21 TRAJ58 CASSVGLFSTDTQYF TRBV9 TRBJ2-3 HomoSapiens HLA-B*27:05 B2M MHCI TRLALIAPK PRPF3 HomoSapiens PMID:36477533 antigen-loaded-targets yes amplicon-seq tetramer-stain Ankylosing Spondylitis AS4.2 synovial fluid 7n2n
265 CAVLSPVQETSGSRLTF TRAV21 TRAJ58 CASSVGLFSTDTQYF TRBV9 TRBJ2-3 HomoSapiens HLA-B*27:05 B2M MHCI LRVMMLAPF YEIH E.Coli PMID:36477533 antigen-loaded-targets yes amplicon-seq tetramer-stain Ankylosing Spondylitis AS4.2 synovial fluid 7n2o
266 CAVSNFNKFYF TRAV21 TRAJ21 CASSVATYSTDTQYF TRBV9 TRBJ2-3 HomoSapiens HLA-B*27:05 B2M MHCI TRLALIAPK PRPF3 HomoSapiens PMID:36477533 antigen-loaded-targets yes amplicon-seq tetramer-stain Ankylosing Spondylitis AS4.3 synovial fluid 7n2r
267 CAVSNFNKFYF TRAV21 TRAJ21 CASSVATYSTDTQYF TRBV9 TRBJ2-3 HomoSapiens HLA-B*27:05 B2M MHCI GQVMVVAPR RNASEH2B HomoSapiens PMID:36477533 antigen-loaded-targets yes amplicon-seq tetramer-stain Ankylosing Spondylitis AS4.3 synovial fluid 7n2p
268 CAVSNFNKFYF TRAV21 TRAJ21 CASSVATYSTDTQYF TRBV9 TRBJ2-3 HomoSapiens HLA-B*27:05 B2M MHCI LRVMMLAPF YEIH E.Coli PMID:36477533 antigen-loaded-targets yes amplicon-seq tetramer-stain Ankylosing Spondylitis AS4.3 synovial fluid 7n2q
269 CAVNSPGSGAGSYQLTF TRAV21 TRAJ28 CASSVGTYSTDTQYF TRBV9 TRBJ2-3 HomoSapiens HLA-B*27:05 B2M MHCI LRVMMLAPF YEIH E.Coli PMID:36477533 antigen-loaded-targets yes amplicon-seq tetramer-stain Ankylosing Spondylitis AS8.4 synovial fluid 8cx4
270 CAVSLGTGAGSYQLTF TRAV21 TRAJ28 CASSVGLYSTDTQYF TRBV9 TRBJ2-3 HomoSapiens HLA-B*27:05 B2M MHCI TRLALIAPK PRPF3 HomoSapiens PMID:36477533 antigen-loaded-targets yes amplicon-seq tetramer-stain Ankylosing Spondylitis AS3.1 synovial fluid 7n2s
271 CAVLSPVQETSGSRLTF TRAV21 TRAJ58 CASSVGLFSTDTQYF TRBV9 TRBJ2-3 HomoSapiens HLA-B*27:05 B2M MHCI TRLALIAPK PRPF3 HomoSapiens PMID:36477533 antigen-loaded-targets yes amplicon-seq tetramer-stain Ankylosing Spondylitis AS4.2 synovial fluid 7n2n
272 CAVLSPVQETSGSRLTF TRAV21 TRAJ58 CASSVGLFSTDTQYF TRBV9 TRBJ2-3 HomoSapiens HLA-B*27:05 B2M MHCI LRVMMLAPF YEIH E.Coli PMID:36477533 antigen-loaded-targets yes amplicon-seq tetramer-stain Ankylosing Spondylitis AS4.2 synovial fluid 7n2o
273 CAVSNFNKFYF TRAV21 TRAJ21 CASSVATYSTDTQYF TRBV9 TRBJ2-3 HomoSapiens HLA-B*27:05 B2M MHCI TRLALIAPK PRPF3 HomoSapiens PMID:36477533 antigen-loaded-targets yes amplicon-seq tetramer-stain Ankylosing Spondylitis AS4.3 synovial fluid 7n2r
274 CAVSNFNKFYF TRAV21 TRAJ21 CASSVATYSTDTQYF TRBV9 TRBJ2-3 HomoSapiens HLA-B*27:05 B2M MHCI GQVMVVAPR RNASEH2B HomoSapiens PMID:36477533 antigen-loaded-targets yes amplicon-seq tetramer-stain Ankylosing Spondylitis AS4.3 synovial fluid 7n2p
275 CAVSNFNKFYF TRAV21 TRAJ21 CASSVATYSTDTQYF TRBV9 TRBJ2-3 HomoSapiens HLA-B*27:05 B2M MHCI LRVMMLAPF YEIH E.Coli PMID:36477533 antigen-loaded-targets yes amplicon-seq tetramer-stain Ankylosing Spondylitis AS4.3 synovial fluid 7n2q
276 CAVNSPGSGAGSYQLTF TRAV21 TRAJ28 CASSVGTYSTDTQYF TRBV9 TRBJ2-3 HomoSapiens HLA-B*27:05 B2M MHCI LRVMMLAPF YEIH E.Coli PMID:36477533 antigen-loaded-targets yes amplicon-seq tetramer-stain Ankylosing Spondylitis AS8.4 synovial fluid 8cx4
8 changes: 8 additions & 0 deletions chunks/PMID_36477533.txt
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chunk.id cdr3.alpha v.alpha j.alpha cdr3.beta v.beta d.beta j.beta species mhc.a mhc.b mhc.class antigen.epitope antigen.gene antigen.species reference.id method.identification method.frequency method.singlecell method.sequencing method.verification meta.study.id meta.cell.subset meta.subset.frequency meta.subject.cohort meta.subject.id meta.replica.id meta.clone.id meta.epitope.id meta.tissue meta.donor.MHC meta.donor.MHC.method meta.structure.id
1 CAVSLGTGAGSYQLTF TRAV21 TRAJ28 CASSVGLYSTDTQYF TRBV9 TRBJ2-3 HomoSapiens HLA-B*27:05 B2M MHCI TRLALIAPK PRPF3 HomoSapiens PMID:36477533 antigen-loaded-targets yes amplicon-seq tetramer-stain Ankylosing Spondylitis AS3.1 synovial fluid 7n2s
2 CAVLSPVQETSGSRLTF TRAV21 TRAJ58 CASSVGLFSTDTQYF TRBV9 TRBJ2-3 HomoSapiens HLA-B*27:05 B2M MHCI TRLALIAPK PRPF3 HomoSapiens PMID:36477533 antigen-loaded-targets yes amplicon-seq tetramer-stain Ankylosing Spondylitis AS4.2 synovial fluid 7n2n
3 CAVLSPVQETSGSRLTF TRAV21 TRAJ58 CASSVGLFSTDTQYF TRBV9 TRBJ2-3 HomoSapiens HLA-B*27:05 B2M MHCI LRVMMLAPF YEIH E.Coli PMID:36477533 antigen-loaded-targets yes amplicon-seq tetramer-stain Ankylosing Spondylitis AS4.2 synovial fluid 7n2o
4 CAVSNFNKFYF TRAV21 TRAJ21 CASSVATYSTDTQYF TRBV9 TRBJ2-3 HomoSapiens HLA-B*27:05 B2M MHCI TRLALIAPK PRPF3 HomoSapiens PMID:36477533 antigen-loaded-targets yes amplicon-seq tetramer-stain Ankylosing Spondylitis AS4.3 synovial fluid 7n2r
5 CAVSNFNKFYF TRAV21 TRAJ21 CASSVATYSTDTQYF TRBV9 TRBJ2-3 HomoSapiens HLA-B*27:05 B2M MHCI GQVMVVAPR RNASEH2B HomoSapiens PMID:36477533 antigen-loaded-targets yes amplicon-seq tetramer-stain Ankylosing Spondylitis AS4.3 synovial fluid 7n2p
6 CAVSNFNKFYF TRAV21 TRAJ21 CASSVATYSTDTQYF TRBV9 TRBJ2-3 HomoSapiens HLA-B*27:05 B2M MHCI LRVMMLAPF YEIH E.Coli PMID:36477533 antigen-loaded-targets yes amplicon-seq tetramer-stain Ankylosing Spondylitis AS4.3 synovial fluid 7n2q
7 CAVNSPGSGAGSYQLTF TRAV21 TRAJ28 CASSVGTYSTDTQYF TRBV9 TRBJ2-3 HomoSapiens HLA-B*27:05 B2M MHCI LRVMMLAPF YEIH E.Coli PMID:36477533 antigen-loaded-targets yes amplicon-seq tetramer-stain Ankylosing Spondylitis AS8.4 synovial fluid 8cx4

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