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known_fusions.txt
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known_fusions.txt
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ACBD6 RRP15
ACSL3 ETV1
ACTB GLI1
AGPAT5 MCPH1
AGTRAP BRAF
AKAP9 BRAF
ARFIP1 FHDC1
ARID1A MAST2
ASPSCR1 TFE3
ATG4C FBXO38
ATIC ALK
BBS9 PKD1L1
BCR ABL1
BCR JAK2
BRD3 NUTM1
BRD4 NUTM1
CANT1 ETV4
CARS ALK
CBFA2T3 GLIS2
CCDC6 RET
CD74 NRG1
CD74 ROS1
CDH11 USP6
CDKN2D WDFY2
CENPK KMT2A
CEP89 BRAF
CHCHD7 PLAG1
CIC DUX4
CIC FOXO4
CLCN6 BRAF
CLIP1 ROS1
CLTC ALK
CLTC TFE3
CNBP USP6
COL1A1 PDGFB
COL1A1 USP6
COL1A2 PLAG1
CRTC1 MAML2
CRTC3 MAML2
CTNNB1 PLAG1
DCTN1 ALK
DDX5 ETV4
DHH RHEBL1
DNAJB1 PRKACA
EIF3E RSPO2
EIF3K CYP39A1
EML4 ALK
EPC1 PHF1
ERC1 RET
ERC1 ROS1
ERO1A FERMT2
ESRP1 RAF1
ETV6 ABL1
ETV6 ITPR2
ETV6 JAK2
ETV6 NTRK3
ETV6 PDGFRB
ETV6 RUNX1
EWSR1 ATF1
EWSR1 CREB1
EWSR1 DDIT3
EWSR1 ERG
EWSR1 ETV1
EWSR1 ETV4
EWSR1 FEV
EWSR1 FLI1
EWSR1 MYB
EWSR1 NFATC1
EWSR1 NFATC2
EWSR1 NR4A3
EWSR1 PATZ1
EWSR1 PBX1
EWSR1 POU5F1
EWSR1 SMARCA5
EWSR1 SP3
EWSR1 WT1
EWSR1 YY1
EWSR1 ZNF384
EWSR1 ZNF444
EZR ERBB4
EZR ROS1
FAM131B BRAF
FBXL18 RNF216
FCHSD1 BRAF
FGFR1 PLAG1
FGFR1 TACC1
FGFR1 ZNF703
FGFR3 BAIAP2L1
FGFR3 TACC3
FN1 ALK
FUS ATF1
FUS CREB3L1
FUS CREB3L2
FUS DDIT3
FUS ERG
FUS FEV
GATM BRAF
GMDS PDE8B
GNAI1 BRAF
GOLGA5 RET
GOPC ROS1
GPBP1L1 MAST2
HACL1 RAF1
HAS2 PLAG1
HERPUD1 BRAF
HEY1 NCOA2
HIP1 ALK
HLA A-ROS1
HMGA2 ALDH2
HMGA2 CCNB1IP1
HMGA2 COX6C
HMGA2 EBF1
HMGA2 FHIT
HMGA2 LHFPL6
HMGA2 LPP
HMGA2 NFIB
HMGA2 RAD51B
HMGA2 WIF1
HNRNPA2B1 ETV1
HOOK3 RET
IL6R ATP8B2
INTS4 GAB2
IRF2BP2 CDX1
JAZF1 PHF1
JAZF1 SUZ12
JPT1 USH1G
KIAA1549 BRAF
KIF5B ALK
KIF5B RET
KLC1 ALK
KLK2 ETV1
KLK2 ETV4
KMT2A ABI1
KMT2A ABI2
KMT2A ACTN4
KMT2A AFDN
KMT2A AFF1
KMT2A AFF3
KMT2A AFF4
KMT2A ARHGAP26
KMT2A ARHGEF12
KMT2A BTBD18
KMT2A CASP8AP2
KMT2A CBL
KMT2A CEP170B
KMT2A CIP2A
KMT2A CREBBP
KMT2A CT45A2
KMT2A DAB2IP
KMT2A EEFSEC
KMT2A ELL
KMT2A EP300
KMT2A EPS15
KMT2A FOXO3
KMT2A FOXO4
KMT2A FRYL
KMT2A GAS7
KMT2A GMPS
KMT2A GPHN
KMT2A KNL1
KMT2A LASP1
KMT2A LPP
KMT2A MAPRE1
KMT2A MLLT1
KMT2A MLLT10
KMT2A MLLT11
KMT2A MLLT3
KMT2A MLLT6
KMT2A MYO1F
KMT2A NCKIPSD
KMT2A NRIP3
KMT2A PDS5A
KMT2A PICALM
KMT2A PRRC1
KMT2A SARNP
KMT2A SEPT2
KMT2A SEPT5
KMT2A SEPT6
KMT2A SEPT9
KMT2A SH3GL1
KMT2A SORBS2
KMT2A TET1
KMT2A TOP3A
KMT2A ZFYVE19
KTN1 RET
LIFR PLAG1
LMNA NTRK1
LRIG3 ROS1
LSM14A BRAF
MBOAT2 PRKCE
MBTD1 CXorf67
MEAF6 PHF1
MIA2 GEMIN2
MKRN1 BRAF
MN1 ETV6
MSN ALK
MYB NFIB
MYO5A ROS1
NAB2 STAT6
NACC2 NTRK2
NCOA4 RET
NDRG1 ERG
NF1 ASIC2
NFIA EHF
NFIX MAST1
NONO TFE3
NOTCH1 GABBR2
NPM1 ALK
NTN1 ACLY
NUP107 LGR5
NUP214 ABL1
NUP98 KDM5A
OMD USP6
PAX3 FOXO1
PAX3 NCOA1
PAX3 NCOA2
PAX5 JAK2
PAX7 FOXO1
PAX8 PPARG
PCM1 JAK2
PCM1 RET
PLA2R1 RBMS1
PLXND1 TMCC1
PML RARA
PPFIBP1 ALK
PPFIBP1 ROS1
PRCC TFE3
PRKAR1A RET
PTPRK RSPO3
PWWP2A ROS1
QKI NTRK2
RAF1 DAZL
RANBP2 ALK
RBM14 PACS1
RELCH RET
RGS22 SYCP1
RNF130 BRAF
RUNX1 RUNX1T1
SDC4 ROS1
SEC16A NOTCH1
SEC31A ALK
SEC31A JAK2
SEPT8 AFF4
SET NUP214
SFPQ TFE3
SHTN1 ROS1
SLC22A1 CUTA
SLC26A6 PRKAR2A
SLC34A2 ROS1
SLC3A2 NRG1
SLC45A3 BRAF
SLC45A3 ELK4
SLC45A3 ERG
SLC45A3 ETV1
SLC45A3 ETV5
SND1 BRAF
SQSTM1 ALK
SRGAP3 RAF1
SS18 SSX1
SS18 SSX2
SS18 SSX4B
SS18 USP6
SS18L1 SSX1
SSBP2 JAK2
SSH2 SUZ12
STIL TAL1
STRN ALK
SUSD1 PTBP3
TADA2A MAST1
TAF15 NR4A3
TBL1XR1 TP63
TCEA1 PLAG1
TCF12 NR4A3
TCF3 PBX1
TECTA TBCEL
TFG ALK
TFG NR4A3
TFG NTRK1
THRAP3 USP6
TMPRSS2 ERG
TMPRSS2 ETV1
TMPRSS2 ETV4
TMPRSS2 ETV5
TP53 NTRK1
TPM3 ROS1
TPM3 ALK
TPM3 NTRK1
TPM3 ROS1
TPM4 ALK
TPR ALK
TPR NTRK1
TRIM24 BRAF
TRIM24 RET
TRIM27 RET
TRIM33 RET
UBE2L3 KRAS
VCL ALK
VTI1A TCF7L2
WDCP ALK
YWHAE NUTM2A
YWHAE NUTM2B
ZC3H7B BCOR
ZCCHC8 ROS1
ZNF700 MAST1
ZSCAN30 BRAF