Data conversion

[jcberny]

Hi there, I have genind and tried using genind2genpop, converting the file into a "formal class genepop". However, when trying running assign.MC it gives me the error "this S4 class is not subsettable". Would you have more suggestions about the data conversion? Thanks in advance.

[alexkychen]

Hi, you can use either a Genepop or Structure format text file to import the data for analyses (see functions read.Genepop and read.Structure). The assignPOP package currently does not support the data converted via adegenet package.

[jcberny]

Thanks. However I´m having issues to get my dataset to Genepop or Structure format. I have a matrix of columns of samples and SNP calls. Would you recommend anything to convert this to Genepop?
Thanks again