tsv-schema.json

[
  {
    "name": "study_ID",
    "valueType": "string",
    "requireNotEmpty": true
  },
  {
    "name": "fasta header name",
    "valueType": "string",
    "requireNotEmpty": true
  },
  {
    "name": "specimen collector sample ID",
    "valueType": "string",
    "requireNotEmpty": true
  },
  {
    "name": "sample collected by",
    "valueType": "string",
    "requireNotEmpty": true
  },
  {
    "name": "sample collection date",
    "valueType": "string",
    "requireNotEmpty": true
  },
  {
    "name": "sample collector email address",
    "valueType": "string"
  },
  {
    "name": "sample collector contact address",
    "valueType": "string"
  },
  {
    "name": "sample received date",
    "valueType": "string"
  },
  {
    "name": "geo_loc name (country)",
    "valueType": "string",
    "requireNotEmpty": true
  },
  {
    "name": "geo_loc name (state/province/territory)",
    "valueType": "string",
    "requireNotEmpty": true
  },
  {
    "name": "organism",
    "valueType": "string",
    "requireNotEmpty": true
  },
  {
    "name": "isolate",
    "valueType": "string",
    "requireNotEmpty": true
  },
  {
    "name": "purpose of sampling",
    "valueType": "string"
  },
  {
    "name": "purpose of sampling details",
    "valueType": "string"
  },
  {
    "name": "anatomical material",
    "valueType": "string"
  },
  {
    "name": "specimen type",
    "valueType": "string",
    "requireNotEmpty": true
  },
  {
    "name": "vibrio cholerae culture method",
    "valueType": "string",
    "requireNotEmpty": true
  },
  {
    "name": "vibrio cholerae culture date",
    "valueType": "string",
    "requireNotEmpty": true
  },
  {
    "name": "vibrio cholerae culture result",
    "valueType": "string",
    "requireNotEmpty": true
  },
  {
    "name": "vibrio cholerae RDT test",
    "valueType": "string"
  },
  {
    "name": "vibrio cholerae RDT test date",
    "valueType": "string"
  },
  {
    "name": "vibrio cholerae RDT result",
    "valueType": "string"
  },
  {
    "name": "serogroup",
    "valueType": "string",
    "requireNotEmpty": true
  },
  {
    "name": "serotype",
    "valueType": "string",
    "requireNotEmpty": true
  },
  {
    "name": "gene name 1",
    "valueType": "string"
  },
  {
    "name": "diagnostic pcr protocol 1",
    "valueType": "string"
  },
  {
    "name": "diagnostic pcr Ct value 1",
    "valueType": "number"
  },
  {
    "name": "gene name 2",
    "valueType": "string"
  },
  {
    "name": "diagnostic pcr protocol 2",
    "valueType": "string"
  },
  {
    "name": "diagnostic pcr Ct value 2",
    "valueType": "number"
  },
  {
    "name": "host (scientific name)",
    "valueType": "string",
    "requireNotEmpty": true
  },
  {
    "name": "host health state",
    "valueType": "string"
  },
  {
    "name": "host age",
    "valueType": "number"
  },
  {
    "name": "host age unit",
    "valueType": "string"
  },
  {
    "name": "host gender",
    "valueType": "string"
  },
  {
    "name": "host residence geo_loc name (country)",
    "valueType": "string"
  },
  {
    "name": "symptom onset date",
    "valueType": "string"
  },
  {
    "name": "signs and symptoms",
    "valueType": "string"
  },
  {
    "name": "dehydration status",
    "valueType": "string"
  },
  {
    "name": "host vaccination status",
    "valueType": "string",
    "requireNotEmpty": true
  },
  {
    "name": "vaccine name",
    "valueType": "string",
    "requireNotEmpty": true
  },
  {
    "name": "location of exposure geo_loc name (country)",
    "valueType": "string"
  },
  {
    "name": "destination of most recent travel (city)",
    "valueType": "string"
  },
  {
    "name": "destination of most recent travel (state/province/territory)",
    "valueType": "string"
  },
  {
    "name": "destination of most recent travel (country)",
    "valueType": "string"
  },
  {
    "name": "most recent travel departure date",
    "valueType": "string"
  },
  {
    "name": "most recent travel return date",
    "valueType": "string"
  },
  {
    "name": "travel history",
    "valueType": "string"
  },
  {
    "name": "authors",
    "valueType": "string"
  }
]