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TODO.md

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Amy's To Do List

Top priorities

  • make betta a generic function

  • betta.phyloseq that takes measures argument

  • betta for original format

  • make breakaway take phyloseq object; run on all at once

  • make breakaway generic -- let take vector of abundances

Next top priorities

  • write estimate class: target, estimate, std error, ci, other

  • rewrite output of all estimators into this form

  • Simplify breakaway output: estimate, std error, ci

  • write estimate_richness_better -- to make phyloseq-like tools

  • write plot_richness_better -- to make phyloseq-like tools

  • write vignette

  • pull request to incorporate breakaway into phyloseq

  • betta should use ggplot

Other things to do

  • streamline breakaway, nof1
  • streamline OB fns