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For my particular work, using IGV for observing alignments is very useful. I normally had to read through the mis_contigs.info file output of Quast to find some example cases of misassemblies that occur while using certain tools for genome assembly. Therefore, to make things easier for myself I wrote a python script that takes the information from the mis_contigs.info file and converts it into a bed.gff file which is supported by IGV. It made the observation process much easier for me, you can clone it from this link below: https://github.com/yamanmalkoc/file_conversion_tools
The text was updated successfully, but these errors were encountered:
For my particular work, using IGV for observing alignments is very useful. I normally had to read through the mis_contigs.info file output of Quast to find some example cases of misassemblies that occur while using certain tools for genome assembly. Therefore, to make things easier for myself I wrote a python script that takes the information from the mis_contigs.info file and converts it into a bed.gff file which is supported by IGV. It made the observation process much easier for me, you can clone it from this link below:
https://github.com/yamanmalkoc/file_conversion_tools
The text was updated successfully, but these errors were encountered: