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Making Quast mis_contig reports compatible with IGV #103

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yamanmalkoc opened this issue Jun 14, 2019 · 0 comments
Open

Making Quast mis_contig reports compatible with IGV #103

yamanmalkoc opened this issue Jun 14, 2019 · 0 comments

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@yamanmalkoc
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For my particular work, using IGV for observing alignments is very useful. I normally had to read through the mis_contigs.info file output of Quast to find some example cases of misassemblies that occur while using certain tools for genome assembly. Therefore, to make things easier for myself I wrote a python script that takes the information from the mis_contigs.info file and converts it into a bed.gff file which is supported by IGV. It made the observation process much easier for me, you can clone it from this link below:
https://github.com/yamanmalkoc/file_conversion_tools

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