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get_study_samples
Possibly related to #6
get_study_samples('MTBLS297')
does not return the samples list shown on the website. (This is probably the case for other studies too, I just happened to check this one.)
It looks like get_study_samples assumes a samples file will be at /files/samples, rather than some other filename.
/files/samples
Something like this seems to work (to find the actual filename):
files <- get_study_files('MTBLS297') samples_file <- files[which(files$type=='metadata_sample'),'file'] download_study_file('MTBLS297', samples_file)
If this is the right approach I can submit a PR with a change to this effect?
The text was updated successfully, but these errors were encountered:
wilsontom
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Possibly related to #6
Reproduce
get_study_samples('MTBLS297')
does not return the samples list shown on the website.
(This is probably the case for other studies too, I just happened to check this one.)
It looks like
get_study_samples
assumes a samples file will be at/files/samples
, rather than some other filename.Possible fix
Something like this seems to work (to find the actual filename):
If this is the right approach I can submit a PR with a change to this effect?
The text was updated successfully, but these errors were encountered: