Test

chore: Migrate noodles 0.102 (#150) #541

	name: Test

	on:
	push:
	branches: [main]
	pull_request:

	permissions:
	contents: read

	env:
	# Disable incremental compilation for faster from-scratch builds
	CARGO_INCREMENTAL: 0

	jobs:
	TestOxbow:
	name: "Test Rust"
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v6
	- run: rustup update

	# Typechecking
	- name: Run Cargo Check
	run: cargo check -p oxbow -p py-oxbow --all-features

	# Linting
	- name: Install Clippy
	run: rustup component add clippy
	- name: Run Clippy
	run: cargo clippy -p oxbow -p py-oxbow --all-features -- -D warnings

	# Assert Formatting
	- name: Install rustfmt
	run: rustup component add rustfmt
	- name: Check Formatting
	run: cargo fmt --all --check

	# Tests
	- name: Download fixtures
	run: cd fixtures && wget -i list.txt

	- name: Run Tests
	run: cargo test -p oxbow -p py-oxbow --all-features

	TestPython:
	name: "Test Python"
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version:
	- '3.9'
	- '3.10'
	- '3.11'
	- '3.12'
	- '3.13'

	steps:
	- uses: actions/checkout@v6
	- run: rustup update
	- uses: astral-sh/setup-uv@v7
	with:
	working-directory: "py-oxbow"
	python-version: ${{ matrix.python-version }}
	- run: \|
	cd py-oxbow/tests
	uv run --no-default-groups --dev pytest

	LintPython:
	name: "Lint Python"
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v6
	- uses: astral-sh/setup-uv@v7
	with:
	working-directory: "py-oxbow"
	- run: \|
	cd py-oxbow
	uv run --no-default-groups --only-group=dev ruff format --check
	uv run --no-default-groups --only-group=dev ruff check

Provide feedback