SkipFormLen always the same

[czfoo]

Hi. I was looking through my rMATS output tables and I found that SkipFormLen is always 99 for every single event, and is only variable in the MXE table. Am I doing something wrong here, or it normal for SkipFormLen to be the same in the entire table? How are SkipFormLen and IncFormLen calculated by rMATS?

[EricKutschera]

The IncFormLen and SkipFormLen calculations for each event type and each file type (JC, JCEC) are shown in the diagram from the README: https://github.com/Xinglab/rmats-turbo/tree/v4.3.0?tab=readme-ov-file#output

The SkipFormLen is r - 2a + 1 for everything except MXE

Here's a related post: #223