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Preparation for release
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‎NEWS.md

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# accucor 0.3.1
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* Minor fix to package documentation (@lparsons)
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# accucor 0.3.0
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* Added reference to package description

‎R/accucor_lib.R

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#' intensities of isotopically labeled mass spectrometry data. It was designed
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#' to work with input data from
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#' \href{https://elucidatainc.github.io/ElMaven/}{El-MAVEN} and
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#' \href{http://maven.princeton.edu}{MAVEN} software.
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#' \href{https://github.com/eugenemel/maven}{MAVEN} software.
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#'
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#' C13, H2, and N15 isotopes are supported. The isotopes are detected from the
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#' \code{isotopeLabel} column of the input file. The expected label text is

‎cran-comments.md

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## Test environments
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Testing via R CMD checks using GitHub Actions with following matrix:
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* os: windows-latest, r: 'release'
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* os: macOS-latest, r: 'release'
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* os: ubuntu-latest, r: 'release'
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* os: ubuntu-latest, r: 'devel', http-user-agent: 'release'
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* os: ubuntu-latest, r: 'oldrel-1'
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## R CMD check results
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There were no ERRORs, WARNINGs, or NOTEs.
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0 errors | 0 warnings | 0 notes
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## revdepcheck results
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## Downstream dependencies
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We checked 1 reverse dependencies (0 from CRAN + 1 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
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There are currently no downstream dependencies for this package.
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* We saw 0 new problems
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* We failed to check 0 packages

‎man/carbon_isotope_correction.Rd

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‎man/deuterium_isotope_correction.Rd

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‎man/natural_abundance_correction.Rd

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‎man/nitrogen_isotope_correction.Rd

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‎revdep/README.md

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# Platform
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|field |value |
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|:--------|:------------------------------------|
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|version |R version 4.1.2 (2021-11-01) |
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|os |Ubuntu 20.04.3 LTS |
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|system |x86_64, linux-gnu |
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|ui |RStudio |
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|language |(EN) |
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|collate |en_US.UTF-8 |
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|ctype |en_US.UTF-8 |
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|tz |America/New_York |
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|date |2021-11-16 |
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|rstudio |2021.09.1+372 Ghost Orchid (desktop) |
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|pandoc |2.5 @ /usr/bin/pandoc |
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|field |value |
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|:--------|:------------------------------------------|
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|version |R version 4.3.1 (2023-06-16) |
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|os |Ubuntu 22.04.3 LTS |
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|system |x86_64, linux-gnu |
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|ui |RStudio |
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|language |(EN) |
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|collate |en_US.UTF-8 |
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|ctype |en_US.UTF-8 |
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|tz |America/New_York |
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|date |2023-09-13 |
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|rstudio |2023.06.2+561 Mountain Hydrangea (desktop) |
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|pandoc |NA |
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# Dependencies
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|package |old |new |Δ |
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|:-----------|:------|:------|:--|
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|accucor |0.2.4 |0.3.0 |* |
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|bit |4.0.4 |4.0.4 | |
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|bit64 |4.0.5 |4.0.5 | |
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|cellranger |1.1.0 |1.1.0 | |
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|CHNOSZ |1.4.1 |1.4.1 | |
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|cli |3.1.0 |3.1.0 | |
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|clipr |0.7.1 |0.7.1 | |
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|cpp11 |0.4.1 |0.4.1 | |
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|crayon |1.4.2 |1.4.2 | |
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|dplyr |1.0.7 |1.0.7 | |
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|ellipsis |0.3.2 |0.3.2 | |
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|fansi |0.5.0 |0.5.0 | |
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|generics |0.1.1 |0.1.1 | |
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|glue |1.5.0 |1.5.0 | |
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|gsubfn |0.7 |NA |* |
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|hms |1.1.1 |1.1.1 | |
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|lifecycle |1.0.1 |1.0.1 | |
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|magrittr |2.0.1 |2.0.1 | |
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|nnls |1.4 |1.4 | |
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|pillar |1.6.4 |1.6.4 | |
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|pkgconfig |2.0.3 |2.0.3 | |
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|prettyunits |1.1.1 |1.1.1 | |
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|progress |1.2.2 |1.2.2 | |
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|proto |1.0.0 |NA |* |
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|purrr |0.3.4 |0.3.4 | |
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|R6 |2.5.1 |2.5.1 | |
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|Rcpp |1.0.7 |1.0.7 | |
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|readr |2.1.0 |2.1.0 | |
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|readxl |1.3.1 |1.3.1 | |
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|rematch |1.0.1 |1.0.1 | |
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|rlang |0.4.12 |0.4.12 | |
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|stringi |1.7.5 |1.7.5 | |
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|stringr |1.4.0 |1.4.0 | |
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|tibble |3.1.6 |3.1.6 | |
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|tidyselect |1.1.1 |1.1.1 | |
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|tzdb |0.2.0 |0.2.0 | |
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|utf8 |1.2.2 |1.2.2 | |
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|vctrs |0.3.8 |0.3.8 | |
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|vroom |1.5.6 |1.5.6 | |
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|withr |2.4.2 |2.4.2 | |
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|writexl |1.4.0 |1.4.0 | |
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|accucor |0.3.0 |0.3.0 |NA |
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|bit |4.0.5 |4.0.5 |NA |
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|bit64 |4.0.5 |4.0.5 |NA |
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|cellranger |1.1.0 |1.1.0 |NA |
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|CHNOSZ |2.0.0 |2.0.0 |NA |
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|cli |3.6.1 |3.6.1 |NA |
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|clipr |0.8.0 |0.8.0 |NA |
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|cpp11 |0.4.6 |0.4.6 |NA |
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|crayon |1.5.2 |1.5.2 |NA |
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|dplyr |1.1.3 |1.1.3 |NA |
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|fansi |1.0.4 |1.0.4 |NA |
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|generics |0.1.3 |0.1.3 |NA |
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|glue |1.6.2 |1.6.2 |NA |
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|hms |1.1.3 |1.1.3 |NA |
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|lifecycle |1.0.3 |1.0.3 |NA |
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|magrittr |2.0.3 |2.0.3 |NA |
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|nnls |1.5 |1.5 |NA |
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|pillar |1.9.0 |1.9.0 |NA |
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|pkgconfig |2.0.3 |2.0.3 |NA |
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|prettyunits |1.1.1 |1.1.1 |NA |
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|progress |1.2.2 |1.2.2 |NA |
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|R6 |2.5.1 |2.5.1 |NA |
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|readr |2.1.4 |2.1.4 |NA |
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|readxl |1.4.3 |1.4.3 |NA |
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|rematch |2.0.0 |2.0.0 |NA |
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|rlang |1.1.1 |1.1.1 |NA |
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|stringi |1.7.12 |1.7.12 |NA |
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|stringr |1.5.0 |1.5.0 |NA |
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|tibble |3.2.1 |3.2.1 |NA |
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|tidyselect |1.2.0 |1.2.0 |NA |
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|tzdb |0.4.0 |0.4.0 |NA |
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|utf8 |1.2.3 |1.2.3 |NA |
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|vctrs |0.6.3 |0.6.3 |NA |
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|vroom |1.6.3 |1.6.3 |NA |
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|withr |2.5.0 |2.5.0 |NA |
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|writexl |1.4.2 |1.4.2 |NA |
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# Revdeps
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## Failed to check (1)
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|package |version |error |warning |note |
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|:-------|:-------|:-----|:-------|:----|
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|FAMetA |? | | | |
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‎revdep/cran.md

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## revdepcheck results
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We checked 0 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
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We checked 1 reverse dependencies (0 from CRAN + 1 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
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* We saw 0 new problems
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* We failed to check 0 packages

‎revdep/failures.md

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*Wow, no problems at all. :)*
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# FAMetA
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<details>
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* Version:
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* GitHub: https://github.com/XiaoyangSu/AccuCor
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* Source code: NA
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* Number of recursive dependencies: 0
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</details>
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## Error before installation
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### Devel
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```
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```
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### CRAN
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```
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```

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