刷新软件依赖 (#22)

* 刷新依赖

* Pandoc 3.3 and remove spacy

* Quarto 1.5.57 and Pandoc 3.4

* 定时任务周二

.github/workflows/quarto-book-netlify.yaml

@@ -7,7 +7,7 @@ on:
   workflow_dispatch:
   schedule:
     # run every day at 11 PM
-    - cron: '0 23 * * 3'
+    - cron: '0 23 * * 1'
 
 concurrency:
   group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
@@ -25,11 +25,12 @@ jobs:
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
       CMDSTAN_VERSION: "2.35.0"
-      PANDOC_VERSION: "3.1.13"
-      QUARTO_VERSION: "1.4.555"
-      R_VERSION: "4.4.0"
+      PANDOC_VERSION: "3.4"
+      QUARTO_VERSION: "1.5.57"
+      R_VERSION: "4.4.1"
       LANG: "en_US.UTF-8"
       TZ: "Asia/Shanghai"
+      RETICULATE_PYTHON: /opt/.virtualenvs/r-tensorflow/bin/python
       RETICULATE_PYTHON_ENV: /opt/.virtualenvs/r-tensorflow
     steps:
       - uses: actions/checkout@v4
@@ -65,8 +66,6 @@ jobs:
           virtualenv -p /usr/bin/python3 $RETICULATE_PYTHON_ENV
           source $RETICULATE_PYTHON_ENV/bin/activate
           pip3 install -r requirements.txt
-          python -m spacy download en_core_web_sm
-          python -m spacy download zh_core_web_sm
           deactivate
 
       - name: Setup CmdStan
@@ -111,8 +110,8 @@ jobs:
           quarto render --to html
         shell: bash
         env:
-          RETICULATE_PYTHON_ENV: /opt/.virtualenvs/r-tensorflow
-          RETICULATE_PYTHON: /opt/.virtualenvs/r-tensorflow/bin/python
+          RETICULATE_PYTHON_ENV: ${{ env.RETICULATE_PYTHON_ENV }}
+          RETICULATE_PYTHON: ${{ env.RETICULATE_PYTHON }}
           CMDSTAN: /opt/cmdstan/cmdstan-${{ env.CMDSTAN_VERSION }}
 
       - name: Deploy book to bookdown.org

DESCRIPTION

@@ -12,28 +12,28 @@ Imports:
     bayesplot,
     blme,
     brms,
-    cmdstanr (>= 0.8.0),
+    cmdstanr (>= 0.8.1),
     downlit,
     expm,
     fastmatrix,
-    fGarch (>= 4031.90),
+    fGarch (>= 4033.92),
     fmesher,
     kernlab,
     FRK (>= 2.2.0),
     glmmTMB,
     glmnet,
     GLMMadaptive,
-    geodata (>= 0.4.13),
+    geodata (>= 0.6-2),
     ggeffects,
     ggfortify,
     ggplot2 (>= 3.5.0),
     ggrepel,
     hexbin,
     hglm,
-    INLA (>= 23.9.9),
-    igraph,
-    keras3 (>= 0.2.0),
-    knitr,
+    INLA (>= 24.1.20),
+    igraph (>= 2.0.3),
+    keras3 (>= 1.1.0),
+    knitr (>= 1.48),
     lars,
     lavaan,
     lme4,
@@ -71,7 +71,6 @@ Imports:
 Suggests: 
     quarto (>= 1.4), 
     rsconnect (>= 1.2.1)
-Remotes: rspatial/geodata
 LinkingTo: BH (>= 1.75.0-0), StanHeaders (>= 2.32.6)
 SystemRequirements: pgf (>= 3.00), JAGS 4.x.y
 Additional_repositories:

requirements.txt

@@ -3,4 +3,3 @@ numpy>=1.25.1
 pandas>=2.1.3
 tensorflow>=2.16.0
 keras>=3.2.0
-spacy>=3.7.2