Render and deploy Book #161
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| on: | |
| push: | |
| branches: main | |
| pull_request: | |
| branches: main | |
| # to be able to trigger a manual build | |
| workflow_dispatch: | |
| schedule: | |
| # run every day at 11 PM | |
| - cron: '0 23 * * 1' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| name: Render and deploy Book | |
| env: | |
| isExtPR: ${{ github.event.pull_request.head.repo.fork == true }} | |
| RUST_BACKTRACE: 1 | |
| jobs: | |
| build-deploy: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| CMDSTAN_VERSION: "2.35.0" | |
| PANDOC_VERSION: "3.4" | |
| QUARTO_VERSION: "1.5.57" | |
| R_VERSION: "4.4.1" | |
| LANG: "en_US.UTF-8" | |
| TZ: "Asia/Shanghai" | |
| RETICULATE_PYTHON: /opt/.virtualenvs/r-tensorflow/bin/python | |
| RETICULATE_PYTHON_ENV: /opt/.virtualenvs/r-tensorflow | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install Quarto | |
| uses: quarto-dev/quarto-actions/setup@v2 | |
| with: | |
| version: ${{ env.QUARTO_VERSION }} | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| r-version: ${{ env.R_VERSION }} | |
| extra-repositories: 'https://stan-dev.r-universe.dev https://inla.r-inla-download.org/R/stable' | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| - name: Install Pandoc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| with: | |
| pandoc-version: ${{ env.PANDOC_VERSION }} | |
| - name: Install TinyTeX | |
| uses: r-lib/actions/setup-tinytex@v2 | |
| env: | |
| # install full prebuilt version | |
| TINYTEX_INSTALLER: TinyTeX | |
| - name: Setup Python | |
| run: | | |
| pip3 install virtualenv | |
| mkdir -p /opt/.virtualenvs/r-tensorflow | |
| virtualenv -p /usr/bin/python3 $RETICULATE_PYTHON_ENV | |
| source $RETICULATE_PYTHON_ENV/bin/activate | |
| pip3 install -r requirements.txt | |
| deactivate | |
| - name: Setup CmdStan | |
| run: | | |
| curl -fLo cmdstan-${CMDSTAN_VERSION}.tar.gz https://github.com/stan-dev/cmdstan/releases/download/v${CMDSTAN_VERSION}/cmdstan-${CMDSTAN_VERSION}.tar.gz | |
| mkdir -p /opt/cmdstan/ | |
| tar -xzf cmdstan-${CMDSTAN_VERSION}.tar.gz -C /opt/cmdstan/ | |
| make build -C /opt/cmdstan/cmdstan-${CMDSTAN_VERSION} | |
| rm cmdstan-${CMDSTAN_VERSION}.tar.gz | |
| - name: Install Fonts From System | |
| run: | | |
| sudo apt-get install -y ghostscript graphviz optipng | |
| sudo apt-get install -y fonts-noto-core fonts-noto-cjk | |
| fc-list | grep 'noto' | sort | |
| fc-list | sort | |
| - name: Install LaTeX packages | |
| run: | | |
| if(!require('tinytex')) install.packages('tinytex') | |
| tinytex::tlmgr_install(readLines("texlive.txt")) | |
| tinytex::tl_pkgs() | |
| tikzDevice::tikzTest("m", engine = "xetex") | |
| tikzDevice::tikzTest("$\\sin(x^2/2 - y^2/4 + 3) \\cos(2 x + 1 - \\exp(y))$") | |
| shell: Rscript {0} | |
| - name: Reinstall R packages from source | |
| run: | | |
| install.packages(c("Matrix", "MatrixModels", "rjags", "lme4", "TMB", "glmmTMB"), repos = "https://cran.r-project.org/", type = "source") | |
| shell: Rscript {0} | |
| - name: Setup magick | |
| run: | | |
| sudo sed -i_bak \ | |
| 's/name="disk" value="1GiB"/name="disk" value="8GiB"/' \ | |
| /etc/ImageMagick-6/policy.xml | |
| - name: Render Book | |
| run: | | |
| source $RETICULATE_PYTHON_ENV/bin/activate | |
| quarto check | |
| quarto render --to html | |
| shell: bash | |
| env: | |
| RETICULATE_PYTHON_ENV: ${{ env.RETICULATE_PYTHON_ENV }} | |
| RETICULATE_PYTHON: ${{ env.RETICULATE_PYTHON }} | |
| CMDSTAN: /opt/cmdstan/cmdstan-${{ env.CMDSTAN_VERSION }} | |
| - name: Deploy book to bookdown.org | |
| env: | |
| CONNECT_API_KEY: ${{ secrets.RSC_BOOKDOWN_TOKEN }} | |
| CONTENT_ID: ${{ secrets.RSC_BOOKDOWN_APP_ID }} | |
| run: | | |
| Rscript '_deploy.R' | |
| - name: Deploy book to Netlify | |
| id: netlify-deploy | |
| uses: nwtgck/[email protected] | |
| with: | |
| publish-dir: './_book' | |
| production-branch: main | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| deploy-message: | |
| 'Deploy from GHA: ${{ github.event.pull_request.title || github.event.head_commit.message }} (${{ github.sha }})' | |
| enable-pull-request-comment: true | |
| enable-commit-comment: true | |
| env: | |
| NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }} | |
| NETLIFY_SITE_ID: ${{ secrets.NETLIFY_SITE_ID }} | |
| timeout-minutes: 1 |