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Render and deploy Book #149

Render and deploy Book

Render and deploy Book #149

on:
push:
branches: main
pull_request:
branches: main
# to be able to trigger a manual build
workflow_dispatch:
schedule:
# run every day at 11 PM
- cron: '0 23 * * 3'
concurrency:
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
cancel-in-progress: true
name: Render and deploy Book
env:
isExtPR: ${{ github.event.pull_request.head.repo.fork == true }}
RUST_BACKTRACE: 1
jobs:
build-deploy:
runs-on: ubuntu-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
CMDSTAN_VERSION: "2.35.0"
PANDOC_VERSION: "3.1.13"
QUARTO_VERSION: "1.4.555"
R_VERSION: "4.4.0"
LANG: "en_US.UTF-8"
TZ: "Asia/Shanghai"
RETICULATE_PYTHON_ENV: /opt/.virtualenvs/r-tensorflow
steps:
- uses: actions/checkout@v4
- name: Install Quarto
uses: quarto-dev/quarto-actions/setup@v2
with:
version: ${{ env.QUARTO_VERSION }}
- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true
r-version: ${{ env.R_VERSION }}
extra-repositories: 'https://stan-dev.r-universe.dev https://inla.r-inla-download.org/R/stable'
- uses: r-lib/actions/setup-r-dependencies@v2
- name: Install Pandoc
uses: r-lib/actions/setup-pandoc@v2
with:
pandoc-version: ${{ env.PANDOC_VERSION }}
- name: Install TinyTeX
uses: r-lib/actions/setup-tinytex@v2
env:
# install full prebuilt version
TINYTEX_INSTALLER: TinyTeX
- name: Setup Python
run: |
pip3 install virtualenv
mkdir -p /opt/.virtualenvs/r-tensorflow
virtualenv -p /usr/bin/python3 $RETICULATE_PYTHON_ENV
source $RETICULATE_PYTHON_ENV/bin/activate
pip3 install -r requirements.txt
python -m spacy download en_core_web_sm
python -m spacy download zh_core_web_sm
deactivate
- name: Setup CmdStan
run: |
curl -fLo cmdstan-${CMDSTAN_VERSION}.tar.gz https://github.com/stan-dev/cmdstan/releases/download/v${CMDSTAN_VERSION}/cmdstan-${CMDSTAN_VERSION}.tar.gz
mkdir -p /opt/cmdstan/
tar -xzf cmdstan-${CMDSTAN_VERSION}.tar.gz -C /opt/cmdstan/
make build -C /opt/cmdstan/cmdstan-${CMDSTAN_VERSION}
rm cmdstan-${CMDSTAN_VERSION}.tar.gz
- name: Install Fonts From System
run: |
sudo apt-get install -y ghostscript graphviz optipng
sudo apt-get install -y fonts-noto-core fonts-noto-cjk
fc-list | grep 'noto' | sort
fc-list | sort
- name: Install LaTeX packages
run: |
if(!require('tinytex')) install.packages('tinytex')
tinytex::tlmgr_install(readLines("texlive.txt"))
tinytex::tl_pkgs()
tikzDevice::tikzTest("m", engine = "xetex")
tikzDevice::tikzTest("$\\sin(x^2/2 - y^2/4 + 3) \\cos(2 x + 1 - \\exp(y))$")
shell: Rscript {0}
- name: Reinstall R packages from source
run: |
install.packages(c("Matrix", "MatrixModels", "rjags", "lme4", "TMB", "glmmTMB"), repos = "https://cran.r-project.org/", type = "source")
shell: Rscript {0}
- name: Setup magick
run: |
sudo sed -i_bak \
's/name="disk" value="1GiB"/name="disk" value="8GiB"/' \
/etc/ImageMagick-6/policy.xml
- name: Render Book
run: |
source $RETICULATE_PYTHON_ENV/bin/activate
quarto check
quarto render --to html
shell: bash
env:
RETICULATE_PYTHON_ENV: /opt/.virtualenvs/r-tensorflow
RETICULATE_PYTHON: /opt/.virtualenvs/r-tensorflow/bin/python
CMDSTAN: /opt/cmdstan/cmdstan-${{ env.CMDSTAN_VERSION }}
- name: Deploy book to bookdown.org
env:
CONNECT_API_KEY: ${{ secrets.RSC_BOOKDOWN_TOKEN }}
CONTENT_ID: ${{ secrets.RSC_BOOKDOWN_APP_ID }}
run: |
Rscript '_deploy.R'
- name: Deploy book to Netlify
id: netlify-deploy
uses: nwtgck/[email protected]
with:
publish-dir: './_book'
production-branch: main
github-token: ${{ secrets.GITHUB_TOKEN }}
deploy-message:
'Deploy from GHA: ${{ github.event.pull_request.title || github.event.head_commit.message }} (${{ github.sha }})'
enable-pull-request-comment: true
enable-commit-comment: true
env:
NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }}
NETLIFY_SITE_ID: ${{ secrets.NETLIFY_SITE_ID }}
timeout-minutes: 1