tests.yml

name: tests 
on:
  push:
    branches:
      - master 
      - main
  pull_request:
    branches:
      - master 
      - main
permissions:
  contents: write
jobs:
  test:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v3
        with:
          fetch-depth: 0
      - uses: "conda-incubator/setup-miniconda@v3"
        with:
          python-version: 3.11
          auto-activate-base: false
          channels: conda-forge,bioconda
          channel-priority: strict
          auto-update-conda: true
      - uses: actions/cache@v2
        with:
          key: ${{ github.ref }}
          path: .cache
      - run: pip install hatch
      - run: sudo apt-get -y install graphviz
      - name: Run tests
        shell: bash
        run: AR=/usr/bin/ar hatch run cov
      - name: Upload coverage reports to Codecov
        uses: codecov/codecov-action@v3