From 3c430cdb967d1abb6af63848d22c29d4527e4b16 Mon Sep 17 00:00:00 2001
From: Kay Robbins <1189050+VisLab@users.noreply.github.com>
Date: Tue, 17 Oct 2023 13:05:53 -0500
Subject: [PATCH] Updated What's new about sFN Booth
---
docs/source/HedGovernance.md | 1 -
docs/source/WhatsNew.md | 4 +++
docs/source/index.rst | 8 +----
.../bids/validate_bids_dataset.ipynb | 31 +++++++------------
.../bids/validate_bids_datasets.ipynb | 8 ++---
5 files changed, 20 insertions(+), 32 deletions(-)
diff --git a/docs/source/HedGovernance.md b/docs/source/HedGovernance.md
index 40834ac..85f32ab 100644
--- a/docs/source/HedGovernance.md
+++ b/docs/source/HedGovernance.md
@@ -1,4 +1,3 @@
--------------------DRAFT---------------------------------------------------
# HED governance and decision-making
Table of Contents
diff --git a/docs/source/WhatsNew.md b/docs/source/WhatsNew.md
index 20652bc..66a2fd0 100644
--- a/docs/source/WhatsNew.md
+++ b/docs/source/WhatsNew.md
@@ -1,6 +1,10 @@
(whats-new-anchor)=
# What's new?
+Upcoming... **Nov. 10-17, 2023 sFN (Society for Neuroscience)** in Washington D.C.:
+> **Visit SCCN booth (#3031)** for help and information (or just to visit) about **NEMAR/OpenNeuro**, **EEGLAB**, **HED**, **LSL**, and **MoBI**.
+
+
**September 20, 2023 16:00 CEST**: **INCF Workshop on HED and BIDS**
> Event annotation in neuroimaging using HED: from experiment to analysis
> Half-day workshop at [**INCF Assembly 2023**](https://neuroinformatics.incf.org/register).
diff --git a/docs/source/index.rst b/docs/source/index.rst
index ac0e6dd..95938ac 100644
--- a/docs/source/index.rst
+++ b/docs/source/index.rst
@@ -105,7 +105,7 @@ Visit the `HED project homepage `_ for links to
IntroductionToHed.md
WhatsNew.md
HowCanYouUseHed.md
-
+ HedGovernance.md
.. toctree::
@@ -144,12 +144,6 @@ Visit the `HED project homepage `_ for links to
HedSchemas.md
HedTestDatasets.md
-.. toctree::
- :maxdepth: 3
- :hidden:
- :caption: Drafts:
-
- HedGovernance.md
Indices and tables
==================
diff --git a/hedcode/jupyter_notebooks/bids/validate_bids_dataset.ipynb b/hedcode/jupyter_notebooks/bids/validate_bids_dataset.ipynb
index 7b9f875..ab597a7 100644
--- a/hedcode/jupyter_notebooks/bids/validate_bids_dataset.ipynb
+++ b/hedcode/jupyter_notebooks/bids/validate_bids_dataset.ipynb
@@ -32,18 +32,8 @@
},
{
"cell_type": "code",
- "execution_count": 1,
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "Using HEDTOOLS version: {'date': '2023-09-01T15:54:07-0500', 'dirty': True, 'error': None, 'full-revisionid': '15594c2afa770e08f3881f4a9de04d21b3113750', 'version': '0.3.0+128.g15594c2.dirty'}\n",
- "HED Examples version: {'version': '0.2.0+131.gae61cba.dirty', 'full-revisionid': 'ae61cba59be07284460a7503b282640e031b5e1f', 'dirty': True, 'error': None, 'date': '2023-09-03T13:50:01-0500'}\n",
- "No HED validation errors\n"
- ]
- }
- ],
+ "execution_count": null,
+ "outputs": [],
"source": [
"from hed.errors import get_printable_issue_string\n",
"from hed.tools import BidsDataset\n",
@@ -55,8 +45,10 @@
"\n",
"## Set the dataset location and the check_for_warnings flag\n",
"check_for_warnings = False\n",
- "dataset_path = '../../../datasets/eeg_ds003645s_hed_column'\n",
- "\n",
+ "#dataset_path = '../../../datasets/eeg_ds003645s_hed_column'\n",
+ "#dataset_path = '../../../datasets/eeg_ds004105s_hed'\n",
+ "dataset_path = 't:/summaryTests/ds004105-download'\n",
+ "outfile = 't:/ds004105_errors.txt'\n",
"## Validate the dataset\n",
"bids = BidsDataset(dataset_path)\n",
"issue_list = bids.validate(check_for_warnings=check_for_warnings)\n",
@@ -64,14 +56,13 @@
" issue_str = get_printable_issue_string(issue_list, \"HED validation errors: \", skip_filename=False)\n",
"else:\n",
" issue_str = \"No HED validation errors\"\n",
- "print(issue_str)"
+ "print(issue_str)\n",
+ "if outfile:\n",
+ " with open(outfile, 'w') as fp:\n",
+ " fp.write(issue_str)\n"
],
"metadata": {
- "collapsed": false,
- "ExecuteTime": {
- "end_time": "2023-09-03T20:15:04.777492900Z",
- "start_time": "2023-09-03T20:14:59.038952100Z"
- }
+ "collapsed": false
}
}
],
diff --git a/hedcode/jupyter_notebooks/bids/validate_bids_datasets.ipynb b/hedcode/jupyter_notebooks/bids/validate_bids_datasets.ipynb
index bb2eb3c..8091091 100644
--- a/hedcode/jupyter_notebooks/bids/validate_bids_datasets.ipynb
+++ b/hedcode/jupyter_notebooks/bids/validate_bids_datasets.ipynb
@@ -36,8 +36,8 @@
"name": "stdout",
"output_type": "stream",
"text": [
- "Using HEDTOOLS version: {'date': '2023-09-01T15:54:07-0500', 'dirty': True, 'error': None, 'full-revisionid': '15594c2afa770e08f3881f4a9de04d21b3113750', 'version': '0.3.0+128.g15594c2.dirty'}\n",
- "HED Examples version: {'version': '0.2.0+131.gae61cba.dirty', 'full-revisionid': 'ae61cba59be07284460a7503b282640e031b5e1f', 'dirty': True, 'error': None, 'date': '2023-09-03T13:50:01-0500'}\n",
+ "Using HEDTOOLS version: {'date': '2023-10-12T10:29:43-0500', 'dirty': False, 'error': None, 'full-revisionid': 'e9e63e39f6a99487c5e69ae96e653c4580045ec0', 'version': '0.3.0+164.ge9e63e3'}\n",
+ "HED Examples version: {'version': '0.2.0+168.g92a829c.dirty', 'full-revisionid': '92a829cb0336bd952db10f1890f23dde80aecd36', 'dirty': True, 'error': None, 'date': '2023-10-10T13:35:06-0500'}\n",
"Validating eeg_ds003645s_hed\n",
"No HED validation errors\n",
"Validating eeg_ds003645s_hed_column\n",
@@ -93,8 +93,8 @@
"name": "#%%\n"
},
"ExecuteTime": {
- "end_time": "2023-09-03T20:21:08.429817700Z",
- "start_time": "2023-09-03T20:20:39.090638800Z"
+ "end_time": "2023-10-17T12:11:03.224728400Z",
+ "start_time": "2023-10-17T12:10:21.630499700Z"
}
}
}