From 95acd2dbe6e22b98c871502916c35ac1230fd8ba Mon Sep 17 00:00:00 2001 From: Matt Graham Date: Wed, 11 Dec 2024 15:48:50 +0000 Subject: [PATCH] Fix proposal function cross reference syntax in vignette --- vignettes/barker-proposal.Rmd | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/vignettes/barker-proposal.Rmd b/vignettes/barker-proposal.Rmd index c810518..4d9134d 100644 --- a/vignettes/barker-proposal.Rmd +++ b/vignettes/barker-proposal.Rmd @@ -48,11 +48,11 @@ target_distribution <- list( `rmcmc` provides implementations of several different proposal distributions which can be used within a Metropolis--Hastings based MCMC method: -- [barker_proposal()]: The robust gradient-based Barker proposal proposed by @livingstone2022barker. -- [langevin_proposal()]: A gradient-based proposal based on a discretization of Langevin dynamics. -- [hamiltonian_proposal()]: A gradient-based proposal based on a discretization of Hamiltonian dynamics, simulated for a fixed number of integrator steps. +- `barker_proposal()`: The robust gradient-based Barker proposal proposed by @livingstone2022barker. +- `langevin_proposal()`: A gradient-based proposal based on a discretization of Langevin dynamics. +- `hamiltonian_proposal()`: A gradient-based proposal based on a discretization of Hamiltonian dynamics, simulated for a fixed number of integrator steps. With a single integrator step equivalent to `langevin_proposal`. -- [random_walk_proposal()]: A Gaussian random-walk proposal. +- `random_walk_proposal()`: A Gaussian random-walk proposal. Each function takes optional arguments which can be used to customize the behaviour of the proposal such as the scalar `scale` of the proposal, a vector or matrix defining the proposal `shape` and routines to sample the auxiliary variables used in the proposal.