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🚀 Feature
For now we have Image Intensity and label data type but we are missing an other : surfaces
This is similar to label type where only spatial transform would be applied (not intensities transforms)
There are different step to will be need here :
_ Choose, the supported surface file format, and chose the library we need to read write surface files
_ Evaluate how to perform spatial transform (affine and elastic,
_ add some specific surface transform / sampler
Not sure how to apply elatic deformation here ... if possible
This is a new project we are starting, not how fare we will get, but I still open an issue, to start the discussion, and may be find other people interested in this ... and could help coding the solution
The text was updated successfully, but these errors were encountered:
🚀 Feature
For now we have Image Intensity and label data type but we are missing an other : surfaces
This is similar to label type where only spatial transform would be applied (not intensities transforms)
Motivation
An ultimate segmentation of brain tissue, should go to surface extraction...
I did not find a lot of work trying to predict cortical surface directly from a MRI 3D volume.
Actually just this one,
https://bitbucket.csiro.au/projects/CRCPMAX/repos/deepcsr/browse/README.md
Pitch
There are different step to will be need here :
_ Choose, the supported surface file format, and chose the library we need to read write surface files
_ Evaluate how to perform spatial transform (affine and elastic,
_ add some specific surface transform / sampler
Alternatives
stay with traditional segmentation...
Additional context
In deepcsr work he use the trimesh library
for instance here
https://bitbucket.csiro.au/projects/CRCPMAX/repos/deepcsr/browse/preprop.py#159
there is just one line, to apply an affine transform.
https://bitbucket.csiro.au/projects/CRCPMAX/repos/deepcsr/browse/preprop.py#162
Not sure how to apply elatic deformation here ... if possible
This is a new project we are starting, not how fare we will get, but I still open an issue, to start the discussion, and may be find other people interested in this ... and could help coding the solution
The text was updated successfully, but these errors were encountered: