{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":267705904,"defaultBranch":"develop","name":"tiatoolbox","ownerLogin":"TissueImageAnalytics","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2020-05-28T22:02:51.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/40120407?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1726848826.0","currentOid":""},"activityList":{"items":[{"before":"437345d7f89b76bf43faf0e4ae9104b982be8cac","after":"3a024dd89a3e8b805a8ac063c043f58f2bd98004","ref":"refs/heads/multichannel-reading","pushedAt":"2024-09-26T17:49:38.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"behnazelhaminia","name":null,"path":"/behnazelhaminia","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/30952176?s=80&v=4"},"commit":{"message":":white_check_mark: Adding small multiplxed image","shortMessageHtmlLink":"βœ… Adding small multiplxed image"}},{"before":"0d693f0bda1ac4798f170b487a08fd3cf3bf157c","after":"4eb0fb9bb5ce4920b5123b7d6a4d25a20f209b7e","ref":"refs/heads/dev-define-patch-classification","pushedAt":"2024-09-26T13:56:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"shaneahmed","name":"Shan E Ahmed Raza","path":"/shaneahmed","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13048456?s=80&v=4"},"commit":{"message":":white_check_mark: Add test for cache_mode for `test_patch_classifier`","shortMessageHtmlLink":"βœ… Add test for cache_mode for test_patch_classifier"}},{"before":"ba1776e4661bd823a5957824a43c1c4f6ed08953","after":"dd02dd389331fe4a77010fe357797eae8951f551","ref":"refs/heads/enhance-torch-compile","pushedAt":"2024-09-26T13:52:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pre-commit-ci[bot]","name":null,"path":"/apps/pre-commit-ci","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/68672?s=80&v=4"},"commit":{"message":"[pre-commit.ci] auto fixes from pre-commit.com hooks\n\nfor more information, see https://pre-commit.ci","shortMessageHtmlLink":"[pre-commit.ci] auto fixes from pre-commit.com hooks"}},{"before":"8cc2fb4a8937b4d918b39e63941f7ff4831f4a6f","after":"ba1776e4661bd823a5957824a43c1c4f6ed08953","ref":"refs/heads/enhance-torch-compile","pushedAt":"2024-09-26T13:52:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Abdol","name":null,"path":"/Abdol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/365168?s=80&v=4"},"commit":{"message":"🚧 Add `torch.compile` to SemanticSegmentor","shortMessageHtmlLink":"🚧 Add torch.compile to SemanticSegmentor"}},{"before":"a086195aa85c4c0acbc0e758062ead4efb4a35f1","after":"8cc2fb4a8937b4d918b39e63941f7ff4831f4a6f","ref":"refs/heads/enhance-torch-compile","pushedAt":"2024-09-26T11:09:23.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"Abdol","name":null,"path":"/Abdol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/365168?s=80&v=4"},"commit":{"message":"Merge branch 'develop' into enhance-torch-compile","shortMessageHtmlLink":"Merge branch 'develop' into enhance-torch-compile"}},{"before":"ef46f8c359dd1ec8799ca92f92e47ec2e296e959","after":"0d693f0bda1ac4798f170b487a08fd3cf3bf157c","ref":"refs/heads/dev-define-patch-classification","pushedAt":"2024-09-24T13:47:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"shaneahmed","name":"Shan E Ahmed Raza","path":"/shaneahmed","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13048456?s=80&v=4"},"commit":{"message":":white_check_mark: Add `test_patch_classifier`","shortMessageHtmlLink":"βœ… Add test_patch_classifier"}},{"before":"376e5445b6635b635e9b6596c88bcb0832ee9005","after":"5fd70b948fc48b3acd6d22e81bf3869ff0b91f64","ref":"refs/heads/pre-commit-ci-update-config","pushedAt":"2024-09-23T19:47:41.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"pre-commit-ci[bot]","name":null,"path":"/apps/pre-commit-ci","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/68672?s=80&v=4"},"commit":{"message":"[pre-commit.ci] pre-commit autoupdate\n\nupdates:\n- [github.com/astral-sh/ruff-pre-commit: v0.6.5 β†’ v0.6.7](https://github.com/astral-sh/ruff-pre-commit/compare/v0.6.5...v0.6.7)","shortMessageHtmlLink":"[pre-commit.ci] pre-commit autoupdate"}},{"before":"ccb62d0a1c8fbd82cd6fe6b9fac0e52d83c0ec4d","after":"437345d7f89b76bf43faf0e4ae9104b982be8cac","ref":"refs/heads/multichannel-reading","pushedAt":"2024-09-22T15:43:08.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"measty","name":"Mark Eastwood","path":"/measty","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20169086?s=80&v=4"},"commit":{"message":"Merge branch 'develop' of https://github.com/TissueImageAnalytics/tiatoolbox into multichannel-reading","shortMessageHtmlLink":"Merge branch 'develop' of https://github.com/TissueImageAnalytics/tia…"}},{"before":"8f76d87d430f070d9e8ca9ecf52dba1c5e5ee097","after":"76c7972060250e3c78a05973599697d25293ade5","ref":"refs/heads/dev-convert-modelabc-to-torch-nn-model","pushedAt":"2024-09-20T16:53:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"shaneahmed","name":"Shan E Ahmed Raza","path":"/shaneahmed","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13048456?s=80&v=4"},"commit":{"message":":white_check_mark: Fix test\n\nSigned-off-by: Shan E Ahmed Raza <13048456+shaneahmed@users.noreply.github.com>","shortMessageHtmlLink":"βœ… Fix test"}},{"before":null,"after":"8f76d87d430f070d9e8ca9ecf52dba1c5e5ee097","ref":"refs/heads/dev-convert-modelabc-to-torch-nn-model","pushedAt":"2024-09-20T16:13:46.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"shaneahmed","name":"Shan E Ahmed Raza","path":"/shaneahmed","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13048456?s=80&v=4"},"commit":{"message":":art: Refactor `ModelABC` to Help Use Default Torch Models\n\nSigned-off-by: Shan E Ahmed Raza <13048456+shaneahmed@users.noreply.github.com>","shortMessageHtmlLink":"🎨 Refactor ModelABC to Help Use Default Torch Models"}},{"before":"efd2d5a88e87dd7ed5d4414fed14f4fe41d0db9a","after":"ef46f8c359dd1ec8799ca92f92e47ec2e296e959","ref":"refs/heads/dev-define-patch-classification","pushedAt":"2024-09-20T16:01:13.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"shaneahmed","name":"Shan E Ahmed Raza","path":"/shaneahmed","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13048456?s=80&v=4"},"commit":{"message":":sparkles: Add post-processing function for classifier.\n\nSigned-off-by: Shan E Ahmed Raza <13048456+shaneahmed@users.noreply.github.com>","shortMessageHtmlLink":"✨ Add post-processing function for classifier."}},{"before":null,"after":"193c58726c94231d607e6b062d2e1563455fe86f","ref":"refs/heads/dev-define-semantic-segmentor","pushedAt":"2024-09-20T13:56:25.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"shaneahmed","name":"Shan E Ahmed Raza","path":"/shaneahmed","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13048456?s=80&v=4"},"commit":{"message":":sparkles: Define `SemanticSegmentor` with the New `EngineABC`","shortMessageHtmlLink":"✨ Define SemanticSegmentor with the New EngineABC"}},{"before":"cb1e4a6711db2951cb770cb75af39c9dadc08c68","after":"efd2d5a88e87dd7ed5d4414fed14f4fe41d0db9a","ref":"refs/heads/dev-define-patch-classification","pushedAt":"2024-09-20T13:48:56.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"shaneahmed","name":"Shan E Ahmed Raza","path":"/shaneahmed","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13048456?s=80&v=4"},"commit":{"message":":memo: Fix docstring","shortMessageHtmlLink":"πŸ“ Fix docstring"}},{"before":null,"after":"cb1e4a6711db2951cb770cb75af39c9dadc08c68","ref":"refs/heads/dev-define-patch-classification","pushedAt":"2024-09-20T13:35:37.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"shaneahmed","name":"Shan E Ahmed Raza","path":"/shaneahmed","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13048456?s=80&v=4"},"commit":{"message":":sparkles: Add `PatchClassification` Engine","shortMessageHtmlLink":"✨ Add PatchClassification Engine"}},{"before":"45d3f155c7e8091fdf333c79cc1eda34b00ebedb","after":null,"ref":"refs/heads/bug-fix-cli--engine-abc","pushedAt":"2024-09-20T13:26:48.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"shaneahmed","name":"Shan E Ahmed Raza","path":"/shaneahmed","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13048456?s=80&v=4"}},{"before":"bc73c5b3c2f4fe7a7aec1b4a25e372ecefc0a11d","after":"8c2f50b396d530ddc7dd2f85c8193e28dbf403b4","ref":"refs/heads/dev-define-engines-abc","pushedAt":"2024-09-20T13:26:41.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"shaneahmed","name":"Shan E Ahmed Raza","path":"/shaneahmed","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13048456?s=80&v=4"},"commit":{"message":":bug: Fix `mypy` Type Checks for `cli/common.py` (#864)\n\n- Fix `mypy` Type Checks for `cli/common.py`","shortMessageHtmlLink":"πŸ› Fix mypy Type Checks for cli/common.py (#864)"}},{"before":null,"after":"45d3f155c7e8091fdf333c79cc1eda34b00ebedb","ref":"refs/heads/bug-fix-cli--engine-abc","pushedAt":"2024-09-20T13:08:17.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"shaneahmed","name":"Shan E Ahmed Raza","path":"/shaneahmed","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13048456?s=80&v=4"},"commit":{"message":":bug: Fix `mypy` Type Checks for `cli/common.py`","shortMessageHtmlLink":"πŸ› Fix mypy Type Checks for cli/common.py"}},{"before":"b8e89dcbf5ac49e3c17b044ef0ca0fe0d0c8e8d6","after":null,"ref":"refs/heads/remove-jinja-dependancy","pushedAt":"2024-09-20T13:05:10.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"shaneahmed","name":"Shan E Ahmed Raza","path":"/shaneahmed","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13048456?s=80&v=4"}},{"before":"81e575db4142a5ff9cb84f7af55fce2bf4350695","after":"bc73c5b3c2f4fe7a7aec1b4a25e372ecefc0a11d","ref":"refs/heads/dev-define-engines-abc","pushedAt":"2024-09-20T12:57:56.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"shaneahmed","name":"Shan E Ahmed Raza","path":"/shaneahmed","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13048456?s=80&v=4"},"commit":{"message":"Merge branch 'develop' into dev-define-engines-abc","shortMessageHtmlLink":"Merge branch 'develop' into dev-define-engines-abc"}},{"before":"a51316163f259833821b6d18c9373ea66e9344f3","after":null,"ref":"refs/heads/dev-define-patchpredictor","pushedAt":"2024-09-20T12:15:16.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"shaneahmed","name":"Shan E Ahmed Raza","path":"/shaneahmed","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13048456?s=80&v=4"}},{"before":"05b1b1d90caf0ed9feec25b36768033d35014049","after":"81e575db4142a5ff9cb84f7af55fce2bf4350695","ref":"refs/heads/dev-define-engines-abc","pushedAt":"2024-09-20T12:15:13.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"shaneahmed","name":"Shan E Ahmed Raza","path":"/shaneahmed","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13048456?s=80&v=4"},"commit":{"message":"πŸ§‘β€πŸ’» Define `PatchPredictor` (#783)\n\n- Redesigns PatchPredictor engine using the new EngineABC base class.\r\n- The WSIs are now processed using the same code as for the processing the patches using WSI based dataloader.\r\n- The intermediate output is saved as zarr for the WSIs to resolve memory issues.\r\n- The output of model architectures should now be a dictionary.\r\n- The output can be specified as AnnotationStore for visualisation using TIAViz.\r\n\r\n---------\r\n\r\nCo-authored-by: abishekrajvg \r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>","shortMessageHtmlLink":"πŸ§‘β€πŸ’» Define PatchPredictor (#783)"}},{"before":"5c6d340c9ad53c381446e90f2d53259a405018eb","after":"a51316163f259833821b6d18c9373ea66e9344f3","ref":"refs/heads/dev-define-patchpredictor","pushedAt":"2024-09-20T12:04:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"shaneahmed","name":"Shan E Ahmed Raza","path":"/shaneahmed","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13048456?s=80&v=4"},"commit":{"message":"[skip ci] :memo: Update docstring","shortMessageHtmlLink":"[skip ci] πŸ“ Update docstring"}},{"before":"d17a02ccd987b2954f59db9205c9646e9eb7f606","after":null,"ref":"refs/heads/mypy-tiatoolbox-cli","pushedAt":"2024-09-20T12:01:50.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"shaneahmed","name":"Shan E Ahmed Raza","path":"/shaneahmed","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13048456?s=80&v=4"}},{"before":"6df856562a5eab27a603646955a2e6fbdd1e7e73","after":"6ef915da8348afa95f61c7a4bf76c49fbff00fbe","ref":"refs/heads/develop","pushedAt":"2024-09-20T12:01:47.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"shaneahmed","name":"Shan E Ahmed Raza","path":"/shaneahmed","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13048456?s=80&v=4"},"commit":{"message":"β˜‘οΈ Add `mypy` Checks in `tiatoolbox/cli` (#846)\n\n- β˜‘οΈ Add `mypy` Checks in `tiatoolbox/cli` \r\n\r\n---------\r\n\r\nCo-authored-by: Shan E Ahmed Raza <13048456+shaneahmed@users.noreply.github.com>","shortMessageHtmlLink":"β˜‘οΈ Add mypy Checks in tiatoolbox/cli (#846)"}},{"before":"90204c67f41c2e12cb6e8bb5f238cea6bb78e76b","after":null,"ref":"refs/heads/refine-patchextractor-doc","pushedAt":"2024-09-20T11:57:15.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"shaneahmed","name":"Shan E Ahmed Raza","path":"/shaneahmed","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13048456?s=80&v=4"}},{"before":"03e749180a15702d761e101b11999caeaaedf408","after":"6df856562a5eab27a603646955a2e6fbdd1e7e73","ref":"refs/heads/develop","pushedAt":"2024-09-20T11:57:12.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"shaneahmed","name":"Shan E Ahmed Raza","path":"/shaneahmed","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13048456?s=80&v=4"},"commit":{"message":"πŸ“ Add `WSIReader` Type Annotation to `input_img` for `PatchExtrator`\n\n- Add `WSIReader` Type Annotation to `input_img` for `PatchExtrator`","shortMessageHtmlLink":"πŸ“ Add WSIReader Type Annotation to input_img for PatchExtrator"}},{"before":"5b142367bbff6ebc836118ea25ba118258a249b4","after":"b2a3cce51c76bea59eb252880c3b0019828a71d1","ref":"refs/heads/patch-extractor-filter","pushedAt":"2024-09-20T11:26:23.000Z","pushType":"push","commitsCount":6,"pusher":{"login":"shaneahmed","name":"Shan E Ahmed Raza","path":"/shaneahmed","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13048456?s=80&v=4"},"commit":{"message":"Merge branch 'develop' into patch-extractor-filter","shortMessageHtmlLink":"Merge branch 'develop' into patch-extractor-filter"}},{"before":"9df1566355c66b0005cb5541f4ed4fec7e0fd52d","after":"ccb62d0a1c8fbd82cd6fe6b9fac0e52d83c0ec4d","ref":"refs/heads/multichannel-reading","pushedAt":"2024-09-20T11:25:38.000Z","pushType":"push","commitsCount":6,"pusher":{"login":"shaneahmed","name":"Shan E Ahmed Raza","path":"/shaneahmed","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13048456?s=80&v=4"},"commit":{"message":"Merge branch 'develop' into multichannel-reading","shortMessageHtmlLink":"Merge branch 'develop' into multichannel-reading"}},{"before":"e7707101cbcc02857c29d17fe546de3999d1a7a3","after":"9a2938bf33a0d31255d9f2e24d2ee52eae2181e3","ref":"refs/heads/address-review-comments","pushedAt":"2024-09-20T11:25:22.000Z","pushType":"push","commitsCount":6,"pusher":{"login":"shaneahmed","name":"Shan E Ahmed Raza","path":"/shaneahmed","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13048456?s=80&v=4"},"commit":{"message":"Merge branch 'develop' into address-review-comments","shortMessageHtmlLink":"Merge branch 'develop' into address-review-comments"}},{"before":"7b6a8f688d2f1be30b02f45b384820c61d5b8094","after":"d17a02ccd987b2954f59db9205c9646e9eb7f606","ref":"refs/heads/mypy-tiatoolbox-cli","pushedAt":"2024-09-19T13:48:45.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"shaneahmed","name":"Shan E Ahmed Raza","path":"/shaneahmed","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13048456?s=80&v=4"},"commit":{"message":"Merge branch 'develop' into mypy-tiatoolbox-cli","shortMessageHtmlLink":"Merge branch 'develop' into mypy-tiatoolbox-cli"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0yNlQxNzo0OTozOC4wMDAwMDBazwAAAATBzNrP","endCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0xOVQxMzo0ODo0NS4wMDAwMDBazwAAAAS66_5b"}},"title":"Activity Β· TissueImageAnalytics/tiatoolbox"}