diff --git a/petric.py b/petric.py index 2f7569a..e5d6408 100755 --- a/petric.py +++ b/petric.py @@ -247,18 +247,19 @@ def get_image(fname): if SRCDIR.is_dir(): - # create list of existing data + # create list of existing data (vis. SIRF_data_preparation/dataset_settings.py) # NB: `MetricsWithTimeout` initialises `SaveIters` which creates `outdir` - data_dirs_metrics = [(SRCDIR / "Siemens_mMR_NEMA_IQ", OUTDIR / "mMR_NEMA", - [MetricsWithTimeout(outdir=OUTDIR / "mMR_NEMA", transverse_slice=72, coronal_slice=109)]), - (SRCDIR / "NeuroLF_Hoffman_Dataset", OUTDIR / "NeuroLF_Hoffman", - [MetricsWithTimeout(outdir=OUTDIR / "NeuroLF_Hoffman", transverse_slice=72)]), - (SRCDIR / "Siemens_Vision600_thorax", OUTDIR / "Vision600_thorax", - [MetricsWithTimeout(outdir=OUTDIR / "Vision600_thorax")]), - (SRCDIR / "Siemens_mMR_ACR", OUTDIR / "mMR_ACR", - [MetricsWithTimeout(outdir=OUTDIR / "mMR_ACR")]), - (SRCDIR / "Mediso_NEMA_IQ", OUTDIR / "Mediso_NEMA", - [MetricsWithTimeout(outdir=OUTDIR / "Mediso_NEMA")]), + data_dirs_metrics = [ + (SRCDIR / "Siemens_mMR_NEMA_IQ", OUTDIR / "mMR_NEMA", + [MetricsWithTimeout(outdir=OUTDIR / "mMR_NEMA", transverse_slice=72, coronal_slice=109)]), + (SRCDIR / "NeuroLF_Hoffman_Dataset", OUTDIR / "NeuroLF_Hoffman", + [MetricsWithTimeout(outdir=OUTDIR / "NeuroLF_Hoffman", transverse_slice=72)]), + (SRCDIR / "Siemens_Vision600_thorax", OUTDIR / "Vision600_thorax", + [MetricsWithTimeout(outdir=OUTDIR / "Vision600_thorax")]), + (SRCDIR / "Siemens_mMR_ACR", OUTDIR / "mMR_ACR", + [MetricsWithTimeout(outdir=OUTDIR / "mMR_ACR", transverse_slice=99)]), + (SRCDIR / "Mediso_NEMA_IQ", OUTDIR / "Mediso_NEMA", + [MetricsWithTimeout(outdir=OUTDIR / "Mediso_NEMA", transverse_slice=22, coronal_slice=89, sagittal_slice=66)]), ] else: log.warning("Source directory does not exist: %s", SRCDIR)