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Simple Mendelian Randomization(Simple_MR)
THIS PROGRAM BUILD BY R 3.6 ver
Need R library :
MendelianRandomization : an R package for performing Mendelian randomization
analyses using summarized data. O Yavorska, S Burgess
MRPRESSO : Detection of widespread horizontal pleiotropy in causal relationships
inferred from Mendelian randomization between complex traits and diseases
Nature Genetics volume 50, pages693–698(2018)
Require OPTIONS
-h | --help print this help message
-e | --Exposure require Exposure Summary statistics
-o | --Outcome require Outcome Summary statistics
-d | --OutDIRPrefix require Simple MR results out DIR Prefix, Make New Directory, Ansolute Pathway
Optional OPTIONS for Exposure LD clumpling
-p | --Presso optional YES or NO defualt YES, Deletion Outlier use MRPRESSO
-P | --plink optional plink 1.9 program download by https://www.cog-genomics.org/plink2
-b | --bfile optional plink file format .bed .bim .fam for LD clumping. Used after the -P option.
input summary statistic file format
Any format usefull!
CAUTIONS
but file head include by SNP,BETA,SE
And White Space Splited data