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[Container Request]: clair3 #933
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enhancement
New feature or request
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I've created an image for this. I will make a PR after adding a test. |
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What tool are you looking for and why?
https://github.com/HKU-BAL/Clair3
variant caller for nanopore data. They provide a dockerfile and pre-built images on dockerhub but may be useful to add our own dockerfile here.
dockerfile for reference: https://github.com/HKU-BAL/Clair3/blob/main/Dockerfile
Looks like a pretty complicated install with various python C/C++ dependencies as well as bioinfo tools like
samtools
. I would probably go with themicromamba
route and install things via micromamba/condaThe text was updated successfully, but these errors were encountered: