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Titanic tutorial with speedml error in plot.py #26

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ghost opened this issue Nov 3, 2017 · 3 comments
Open

Titanic tutorial with speedml error in plot.py #26

ghost opened this issue Nov 3, 2017 · 3 comments

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@ghost
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ghost commented Nov 3, 2017

I'm just following the tutorial on your github page. When I hit sml.plot.xgb_importance() method, I get below error

python3.6\lib\site-packages\speedml\plot.py in xgb_importance(self)
145 X = X.drop([Base.target], axis=1)
146 self._create_feature_map(X.columns)
--> 147 fscore = Base.xgb_model.booster.get_fscore(fmap=Base._config['outpath'] + 'xgb.fmap')
148 self._plot_importance(list(fscore.keys()), list(fscore.values()))

AttributeError: 'str' object has no attribute 'get_fscore'

pdb Base.xgb_model below

XGBClassifier(base_score=0.5, booster='gbtree', colsample_bylevel=1,
colsample_bytree=0.8, gamma=0, learning_rate=0.1, max_delta_step=0,
max_depth=3, min_child_weight=1, missing=None, n_estimators=17,
nthread=-1, objective='binary:logistic', reg_alpha=0, reg_lambda=1,
scale_pos_weight=1, seed=0, silent=True, subsample=0.8)

booster is a string and not xgboost module

It is not clear how to resolve the issue. Python version 3.6, speedml version 0.9, xgboost version 0.6, running on Windows 10 with Jupyter notebook

@stewart123579
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LOL I just sent a pull request (#27) to fix this exact issue.

@ghost
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ghost commented Nov 30, 2017

I tried a few local code changes to fix the error but it just went down a rabbit hole and would fail further down a level. Windows seems to not support xgboost module

I switched to Unix environment and was able to get it working. I use digital ocean droplet to run this and use SSH tunnel to access jupyter on my browser.

@ghost
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ghost commented Nov 30, 2017

I'll try your fix when the PR is merged. I'm curious to see the fix 😊

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