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data_kidney_KPMP_VISIUM #101

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FADHLyemen opened this issue Dec 13, 2023 · 6 comments
Open

data_kidney_KPMP_VISIUM #101

FADHLyemen opened this issue Dec 13, 2023 · 6 comments
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@FADHLyemen
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@FADHLyemen
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@FADHLyemen FADHLyemen self-assigned this Dec 13, 2023
@Jieran-S
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Hi, I'm checking the google sheet for data section. Is this the dataset related to row 14 the Visium data on human Kidney with reference https://www.nature.com/articles/s41586-023-05769-3 ? Can I know if you're still implementing the dataset? thanks!

@FADHLyemen
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@Jieran-S
Yes, I already implemented it and tested it.

@Jieran-S
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Awesome!! I couldn't find the folder for your data at the main branch. Could you point me to the folder for your results? Thank you!

@FADHLyemen
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/home/jovyan/scratch/SpaceHack2/data/KPMP_KIDNEY

download script is
/home/jovyan/scratch/SpaceHack2/data/KPMP_KIDNEY/downLoad_KPMP_data.ipynb

test scrip is
'scratch/SpaceHack2/test_scripts/test_data_wo_download_KPMP.sh'

@FADHLyemen
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@Jieran-S did you find them?

@Jieran-S
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Yes! Thank you! I might do some modifications so we can loop them on github as well --- Will discuss this with Naveed and keep you updated! Thanks for implementing them :))

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