From f59f7fb4cff7c4fbecf43def2f56d7e8dc59121f Mon Sep 17 00:00:00 2001 From: dhatribadri Date: Wed, 4 Dec 2024 15:17:18 -0500 Subject: [PATCH] Removed additional single quotes after singularity flag for snakemake command --- .github/workflows/test_pipeline.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/test_pipeline.yml b/.github/workflows/test_pipeline.yml index 079e24a..1aa025d 100644 --- a/.github/workflows/test_pipeline.yml +++ b/.github/workflows/test_pipeline.yml @@ -121,5 +121,5 @@ jobs: with: directory: '.' snakefile: 'QCD.smk' - args: '--cores 4 --use-conda --use-singularity --use-envmodules --conda-cleanup-pkgs cache -j 999 --conda-frontend conda --configfile .test/config/config.yaml --latency-wait 1000 --singularity-args "--userns"'' + args: '--cores 4 --use-conda --use-singularity --use-envmodules --conda-cleanup-pkgs cache -j 999 --conda-frontend conda --configfile .test/config/config.yaml --latency-wait 1000 --singularity-args "--userns"' #run: echo "🍏 This job's status is ${{ job.status }}."