From cec3be4aa7ab9be03079a4e82868b181519e2364 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jon=20Haitz=20Legarreta=20Gorro=C3=B1o?= Date: Thu, 22 Jun 2023 15:24:58 -0400 Subject: [PATCH] DOC: Add population average `FreeSurfer` parcellation info to `README` Add population average `FreeSurfer` parcellation information to `README`: add short explanation on how it was computed and a link to the corresponding `NIfTI` file hosted together with the rest of the data in `zenodo`. --- README.md | 8 ++++++-- 1 file changed, 6 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index b86c981..e076f32 100644 --- a/README.md +++ b/README.md @@ -24,14 +24,18 @@ This Github repository provides an anatomically curated white matter atlas to en - Drag and drop the selected mrml file onto 3D Slicer for visualization. - Note: Use the Models module in 3D Slicer to visualize each individual fiber cluster, as described above. -### 1.3. Population mean T1/T2/b0 images +### 1.3. Population mean T1/T2/b0 images and FreeSurfer parcellation -For anatomical reference, we provide the atlas population mean T1/T2/b0 images. These images are computed by transforming the T1/T2/b0 images of the 100 HCP-atlas subjects (included for the atlas generation) into the atlas space. +For anatomical reference, we provide the atlas population MRI mean T1/T2/b0 and FreeSurfer parcellation images. The MRI +images are computed by transforming the T1/T2/b0 images of the 100 HCP-atlas subjects (included for the atlas +generation) into the atlas space. The FreeSurfer parcellation is computed using a majority vote strategy out of the +individual subjects' FreeSurfer parcellations in the atlas space. - Download the following images: - [100HCP-population-mean-T1.nii.gz](https://zenodo.org/record/2648292/files/100HCP-population-mean-T1.nii.gz?download=1), ~40MB - [100HCP-population-mean-T2.nii.gz](https://zenodo.org/record/2648292/files/100HCP-population-mean-T2.nii.gz?download=1), ~40MB - [100HCP-population-mean-b0.nii.gz](https://zenodo.org/record/2648292/files/100HCP-population-mean-b0.nii.gz?download=1), ~15MB + - [100HCP-population-mean-fs_wmparc.nii.gz](https://zenodo.org/record/8082481/files/100HCP-population-mean-wmparc.nii.gz?download=1), ~845kB - Drag and drop one image (or multiple images) onto 3D Slicer for visualization. ## 2. Download the ORG Atlas for Subject-specific Tractography Parcellation