Error when running train.py

[Rhinogradentia]

Hi,

I installed plasClass via conda and classify_fasta.py is running without errors. As my organism order/family can't be found in https://ccb-microbe.cs.uni-saarland.de/plsdb2025/browse I'd like to train on a known plasmid of a related species.

I ran it this way:

(plassClass):/PlasClass$ train.py -p plasmids.fasta -c genome.fasta -o train/ -n 25
Traceback (most recent call last):
  File "/home/<user>/miniconda3_new/envs/plassClass/bin/train.py", line 21, in <module>
    import plasclass_utils as utils
ModuleNotFoundError: No module named 'plasclass_utils'

I used the sequences for the plasmid and the chromosomes from NCBI. When searching for the python-script it is found:

(plassClass) /PlasClass$ find /home/<user>/miniconda3_new/envs/plassClass/ -name plasclass_utils*
/home/<user>/miniconda3_new/envs/plassClass/lib/python3.7/site-packages/plasclass/__pycache__/plasclass_utils.cpython-37.pyc
/home/<user>/miniconda3_new/envs/plassClass/lib/python3.7/site-packages/plasclass/plasclass_utils.py

Any idea what might be wrong?
Any help really appreciated.

Best,
Nadine

[Rhinogradentia]

Found it myself.

Exchange

import plasclass_utils as utils

by

from plasclass import plasclass_utils as utils

in train.py