Final PROST run after colabfold is complete

[Cato737]

Hi, I am excited to use your software to predict the effects of mutations on a list of about 700 proteins. I am running colabfold locally on my Linux right now. When it is complete, how will python Mutation_pred.py know how/where to reference the pdb relaxed structures from that run?

I do not see the connection in the file:

import Model_pred

#path to databases and psiblast
BLAST_DATABASE="$HOME/Downloads/uniref50db/uniref50"
HHBLITS_DATABASE = "$HOME/Downloads/uniclust30_2018_08/uniclust30_2018_08"
BLAST_NUM_THREADS = 12

Model_pred.main(BLAST_DATABASE, BLAST_NUM_THREADS, HHBLITS_DATABASE)

I hope to hear from you soon!