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Example
Species sunburst for Clostridia in RF01315 shows that there are 64 sequences:
An example SQL query confirming the number of sequences:
SELECT CONCAT(t1.rfamseq_acc, '/', seq_start, '-', `seq_end`) FROM full_region t1, rfamseq t2, taxonomy t3 WHERE t1.rfam_acc = 'RF01315' AND t1.rfamseq_acc = t2.rfamseq_acc AND t2.ncbi_id = t3.ncbi_id AND t3.tax_string LIKE '%Clostridia;%' AND is_significant = 1 GROUP BY rfamseq_acc;
64 rows (like in sunburst UI) - note the GROUP BY clause
However, there are many more annotated regions:
SELECT CONCAT(t1.rfamseq_acc, '/', seq_start, '-', `seq_end`) FROM full_region t1, rfamseq t2, taxonomy t3 WHERE t1.rfam_acc = 'RF01315' AND t1.rfamseq_acc = t2.rfamseq_acc AND t2.ncbi_id = t3.ncbi_id AND t3.tax_string LIKE '%Clostridia;%' AND is_significant = 1;
6222 rows - no GROUP BY clause
So the number of entries in the resulting FASTA file is inconsistent with sunburst UI.
The text was updated successfully, but these errors were encountered:
AntonPetrov
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Example
Species sunburst for Clostridia in RF01315 shows that there are 64 sequences:
An example SQL query confirming the number of sequences:
64 rows (like in sunburst UI) - note the GROUP BY clause
However, there are many more annotated regions:
6222 rows - no GROUP BY clause
So the number of entries in the resulting FASTA file is inconsistent with sunburst UI.
The text was updated successfully, but these errors were encountered: