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Checklist for 14.9 #122

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58 tasks done
emmaco opened this issue May 11, 2022 · 1 comment
Closed
58 tasks done

Checklist for 14.9 #122

emmaco opened this issue May 11, 2022 · 1 comment
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@emmaco
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emmaco commented May 11, 2022

Data updates

  • Export annotated CM and SEED files
  • Update PDB mapping
  • Run view processes
  • Run clan competition
  • Run make_rfam_keywords_table.pl
  • Update family_ncbi
  • Update the family table (number_of_species and num_full fields)
  • Update the version table
  • Update RNAcentral descriptions

Update FTP archive

  • Create .release FTP directory
  • database_files
  • fasta_files
  • genome_browser_hub
  • rfam2go
  • COPYING
  • README including Section 5
  • Rfam.clanin
  • Rfam.cm.gz
  • Rfam.full_region.gz
  • Rfam.pdb.gz
  • Rfam.seed.gz
  • Rfam.seed_tree.gz
  • Rfam.tar.gz
  • USERMAN
  • stats file

Pre Announce

  • Update EBI text search on wwwdev
  • Update the website
  • Add release graphic
  • Update pages with new data (e.g. microRNA or viral project pages)
  • Merge new code into rfam-website master
  • Update the REL MySQL database
  • Stop Apache in OY
  • Update the OY web production MySQL database
  • Update rfamweb_local.conf (fields ebi_search and connect_info) in OY
  • Deploy new website code in OY
  • Start Apache in OY
  • Verify OY VMs directly
  • Repeat for PG
  • Move.release FTP directory to release
  • Update CURRENT FTP symlink
  • Update Public MySQL database using Sequel Ace
  • Load new data into a new database called rfam_xx_x
  • Rename the Rfam database to rfam_xx_y
  • Rename the rfam_xx_x database to Rfam
  • Delete old databases to save space on PUB
  • Update EBI cmscan search - check that it automatically picks up the new covariance models from the production FTP location
  • Update RNAcentral sequence search
  • update rfam_local.py config to latest db

Announce

  • Publish blog post with the Rfam tag
  • Post on Twitter

Post Announce

  • Close GitHub release project
  • Review GitHub issues
  • Backup old text search files - tar.gz folder in search_dumps
  • Update EBI text search in production
  • Make sure production website uses production search index
  • Update Rfam models in R2DT
  • Update Rfam taxonomy and create a new GitHub release
  • Create a release checklist for the next release
@AntonPetrov AntonPetrov pinned this issue Aug 18, 2022
@emmaco
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emmaco commented Nov 2, 2022

Update family_ncbi
Update the family table (number_of_species and num_full fields)
Update the version table

  • these are all done by the script populate_rfamlive_for_release.py --all

@emmaco emmaco self-assigned this Nov 14, 2022
@emmaco emmaco closed this as completed Nov 13, 2023
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