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rfci.pl -onlydesc -m 'Fix characters in AU line' RF04184
resulted in an error:
ERROR trying to fetch taxids from genbank, reached maximum allowed number of failed attempts (10)
The family was successfully checked in after a few attempts, but in general -onlydesc should have prevented the taxid check.
Seems like the problem is in _commitEntry of Commit.pm.
More logs:
rfci.pl -onlydesc -m 'Fix characters in AU line' RF04184
Successfully loaded local copy of RF04184 through middleware
Successfully loaded SVN copy of RF04184 through middleware
No GO mappings for this family-have you tried to add any?
Look up:
http://www.geneontology.org/ or http://www.ebi.ac.uk/QuickGO/
Failed to commit family, RF04184: [A repository hook failed: Commit failed (details follow):: Commit blocked by pre-commit hook (exit code 1) with output:
[
[0] "trunk/Families/RF04184/DESC"
]
trunk/Families/RF04184/DESC[]
[]
ERROR trying to fetch taxids from genbank, reached maximum allowed number of failed attempts (10)
Tried to fetch taxid
-
at rfam-family-pipeline/Rfam/Lib/Bio/Rfam/FamilyIO.pm line 4156.
DBIx::Class::Storage::TxnScopeGuard::DESTROY(): A DBIx::Class::Storage::TxnScopeGuard went out of scope without explicit commit or error. Rolling back. at perl5/lib/perl5/Carp.pm line 291
at rfam-family-pipeline/Rfam/Lib/Bio/Rfam/SVN/Client.pm line 597.
]
at rfam-family-pipeline/Rfam/Lib/Bio/Rfam/SVN/Client.pm line 599.
Bio::Rfam::SVN::Client::commitFamilyDESC(Bio::Rfam::SVN::Client=HASH(0x1cf17c8), "RF04184") called at rfam-family-pipeline/Rfam/Scripts/svn/rfci.pl line 187
The text was updated successfully, but these errors were encountered:
The following command
resulted in an error:
The family was successfully checked in after a few attempts, but in general
-onlydesc
should have prevented the taxid check.Seems like the problem is in
_commitEntry
ofCommit.pm
.More logs:
The text was updated successfully, but these errors were encountered: