diff --git a/articles/devoptera.html b/articles/devoptera.html index 2e68901..c9649d1 100644 --- a/articles/devoptera.html +++ b/articles/devoptera.html @@ -92,7 +92,7 @@


-Vignette updated: Dec-10-2023
+Vignette updated: Apr-01-2024

Source: vignettes/devoptera.Rmd @@ -122,11 +122,6 @@ 

 devoptera::source_all(packages = c("rlang","data.table"))
## Loading required package: rlang
-
## 
-## Attaching package: 'rlang'
-
## The following object is masked from 'package:base':
-## 
-##     %||%
## Loading required package: data.table
## 
 ## Attaching package: 'data.table'
@@ -172,7 +167,7 @@

Define a function
+
@@ -183,7 +178,7 @@ 
Convert arguments to variables
+
 
## Sourcing 19 files.

 
## Using input function.

@@ -191,8 +186,8 @@ 
Convert arguments to variables## Assigning arguments of function: myfunc

 
## Assigning global ->> a

 
## Assigning global ->> b

-
## Using existing global: c

-
+
## Reassigning global ->> c

+
 args

 
## $a
 ## [1] 1
@@ -215,7 +210,7 @@ 
Clear
 source_all/args2vars) don’t override the
 functions/variables within your reinstalled package (in the next
 step).

-
+
 devoptera::rma()

 

 

@@ -227,7 +222,7 @@ 
Reinstall
+
 install()

 

 

@@ -243,7 +238,7 @@ 

 rBiocStyle::CRANpkg(‘devtools’)`.

 
This function is equivalent to the keystrokes
 CMD+SHIFT+E within RStudio.

-
+
 check()

 

 

@@ -252,7 +247,7 @@ 

 

 
This BiocCheck function is directly imported from
 rBiocpkg::CRANpkg(‘BiocCheck’)`.

-
 

@@ -286,113 +281,115 @@ 
Session Infodevoptera::session_info provides a collapsible version
 of the Session Info, which can be helpful when Session Info is
 particularly long.

-
+
 devoptera::session_info()

 
## ─ Session info ───────────────────────────────────────────────────────────────
 ##  setting  value
-##  version  R Under development (unstable) (2023-11-22 r85609)
-##  os       Ubuntu 22.04.3 LTS
+##  version  R Under development (unstable) (2024-03-28 r86224)
+##  os       Ubuntu 22.04.4 LTS
 ##  system   x86_64, linux-gnu
 ##  ui       X11
 ##  language en
 ##  collate  en_US.UTF-8
 ##  ctype    en_US.UTF-8
 ##  tz       UTC
-##  date     2023-12-10
+##  date     2024-04-01
 ##  pandoc   3.1.1 @ /usr/local/bin/ (via rmarkdown)
 ## 
 ## ─ Packages ───────────────────────────────────────────────────────────────────
-##  package       * version    date (UTC) lib source
-##  Biobase         2.63.0     2023-10-24 [1] Bioconductor
-##  BiocBaseUtils   1.5.0      2023-10-24 [1] Bioconductor
-##  BiocCheck       1.39.0     2023-10-24 [1] Bioconductor
-##  BiocFileCache   2.11.1     2023-10-26 [1] Bioconductor
-##  BiocGenerics    0.49.1     2023-11-01 [1] Bioconductor
-##  BiocManager     1.30.22    2023-08-08 [1] CRAN (R 4.4.0)
-##  BiocStyle     * 2.31.0     2023-10-24 [1] Bioconductor
-##  biocViews       1.71.1     2023-10-25 [1] Bioconductor
-##  bit             4.0.5      2022-11-15 [1] CRAN (R 4.4.0)
-##  bit64           4.0.5      2020-08-30 [1] CRAN (R 4.4.0)
-##  bitops          1.0-7      2021-04-24 [1] CRAN (R 4.4.0)
-##  blob            1.2.4      2023-03-17 [1] CRAN (R 4.4.0)
-##  bookdown        0.37       2023-12-01 [1] CRAN (R 4.4.0)
-##  bslib           0.6.1      2023-11-28 [2] CRAN (R 4.4.0)
-##  cachem          1.0.8      2023-05-01 [2] CRAN (R 4.4.0)
-##  cli             3.6.1      2023-03-23 [2] CRAN (R 4.4.0)
-##  codetools       0.2-19     2023-02-01 [3] CRAN (R 4.4.0)
-##  curl            5.2.0      2023-12-08 [2] CRAN (R 4.4.0)
-##  data.table    * 1.14.10    2023-12-08 [1] CRAN (R 4.4.0)
-##  DBI             1.1.3      2022-06-18 [1] CRAN (R 4.4.0)
-##  dbplyr          2.4.0      2023-10-26 [1] CRAN (R 4.4.0)
-##  desc            1.4.3      2023-12-10 [1] CRAN (R 4.4.0)
-##  devoptera     * 0.99.1     2023-12-10 [1] Bioconductor
-##  devtools        2.4.5      2022-10-11 [2] CRAN (R 4.4.0)
-##  digest          0.6.33     2023-07-07 [2] CRAN (R 4.4.0)
-##  dplyr           1.1.4      2023-11-17 [1] CRAN (R 4.4.0)
-##  ellipsis        0.3.2      2021-04-29 [2] CRAN (R 4.4.0)
-##  evaluate        0.23       2023-11-01 [2] CRAN (R 4.4.0)
-##  fansi           1.0.6      2023-12-08 [2] CRAN (R 4.4.0)
-##  fastmap         1.1.1      2023-02-24 [2] CRAN (R 4.4.0)
-##  filelock        1.0.2      2018-10-05 [1] CRAN (R 4.4.0)
-##  fs              1.6.3      2023-07-20 [2] CRAN (R 4.4.0)
-##  generics        0.1.3      2022-07-05 [1] CRAN (R 4.4.0)
-##  glue            1.6.2      2022-02-24 [2] CRAN (R 4.4.0)
-##  graph           1.81.0     2023-10-24 [1] Bioconductor
-##  here            1.0.1      2020-12-13 [1] CRAN (R 4.4.0)
-##  htmltools       0.5.7      2023-11-03 [2] CRAN (R 4.4.0)
-##  htmlwidgets     1.6.4      2023-12-06 [2] CRAN (R 4.4.0)
-##  httpuv          1.6.13     2023-12-06 [2] CRAN (R 4.4.0)
-##  httr            1.4.7      2023-08-15 [2] CRAN (R 4.4.0)
-##  jquerylib       0.1.4      2021-04-26 [2] CRAN (R 4.4.0)
-##  jsonlite        1.8.8      2023-12-04 [2] CRAN (R 4.4.0)
-##  knitr           1.45       2023-10-30 [2] CRAN (R 4.4.0)
-##  later           1.3.2      2023-12-06 [2] CRAN (R 4.4.0)
-##  lifecycle       1.0.4      2023-11-07 [2] CRAN (R 4.4.0)
-##  magrittr        2.0.3      2022-03-30 [2] CRAN (R 4.4.0)
-##  memoise         2.0.1      2021-11-26 [2] CRAN (R 4.4.0)
-##  mime            0.12       2021-09-28 [2] CRAN (R 4.4.0)
-##  miniUI          0.1.1.1    2018-05-18 [2] CRAN (R 4.4.0)
-##  pillar          1.9.0      2023-03-22 [2] CRAN (R 4.4.0)
-##  pkgbuild        1.4.3      2023-12-10 [1] CRAN (R 4.4.0)
-##  pkgconfig       2.0.3      2019-09-22 [2] CRAN (R 4.4.0)
-##  pkgdown         2.0.7      2022-12-14 [1] CRAN (R 4.4.0)
-##  pkgload         1.3.3      2023-09-22 [2] CRAN (R 4.4.0)
-##  profvis         0.3.8      2023-05-02 [2] CRAN (R 4.4.0)
-##  promises        1.2.1      2023-08-10 [2] CRAN (R 4.4.0)
-##  purrr           1.0.2      2023-08-10 [2] CRAN (R 4.4.0)
-##  R.methodsS3     1.8.2      2022-06-13 [1] CRAN (R 4.4.0)
-##  R.oo            1.25.0     2022-06-12 [1] CRAN (R 4.4.0)
-##  R.utils         2.12.3     2023-11-18 [1] CRAN (R 4.4.0)
-##  R6              2.5.1      2021-08-19 [2] CRAN (R 4.4.0)
-##  ragg            1.2.6      2023-10-10 [2] CRAN (R 4.4.0)
-##  RBGL            1.79.0     2023-10-24 [1] Bioconductor
-##  Rcpp            1.0.11     2023-07-06 [2] CRAN (R 4.4.0)
-##  RCurl           1.98-1.13  2023-11-02 [1] CRAN (R 4.4.0)
-##  remotes         2.4.2.9000 2023-12-10 [1] Github (r-lib/remotes@6fe8836)
-##  rlang         * 1.1.2      2023-11-04 [2] CRAN (R 4.4.0)
-##  rmarkdown       2.25       2023-09-18 [1] CRAN (R 4.4.0)
-##  rprojroot       2.0.4      2023-11-05 [2] CRAN (R 4.4.0)
-##  RSQLite         2.3.4      2023-12-08 [1] CRAN (R 4.4.0)
-##  rstudioapi      0.15.0     2023-07-07 [2] CRAN (R 4.4.0)
-##  RUnit           0.4.32     2018-05-18 [1] CRAN (R 4.4.0)
-##  sass            0.4.8      2023-12-06 [2] CRAN (R 4.4.0)
-##  sessioninfo     1.2.2      2021-12-06 [2] CRAN (R 4.4.0)
-##  shiny           1.8.0      2023-11-17 [2] CRAN (R 4.4.0)
-##  stringdist      0.9.12     2023-11-28 [1] CRAN (R 4.4.0)
-##  stringi         1.8.2      2023-11-23 [2] CRAN (R 4.4.0)
-##  stringr         1.5.1      2023-11-14 [2] CRAN (R 4.4.0)
-##  systemfonts     1.0.5      2023-10-09 [2] CRAN (R 4.4.0)
-##  textshaping     0.3.7      2023-10-09 [2] CRAN (R 4.4.0)
-##  tibble          3.2.1      2023-03-20 [2] CRAN (R 4.4.0)
-##  tidyselect      1.2.0      2022-10-10 [1] CRAN (R 4.4.0)
-##  urlchecker      1.0.1      2021-11-30 [2] CRAN (R 4.4.0)
-##  usethis         2.2.2      2023-07-06 [2] CRAN (R 4.4.0)
-##  utf8            1.2.4      2023-10-22 [2] CRAN (R 4.4.0)
-##  vctrs           0.6.5      2023-12-01 [2] CRAN (R 4.4.0)
-##  xfun            0.41       2023-11-01 [2] CRAN (R 4.4.0)
-##  XML             3.99-0.16  2023-11-29 [1] CRAN (R 4.4.0)
-##  xtable          1.8-4      2019-04-21 [2] CRAN (R 4.4.0)
-##  yaml            2.3.7      2023-01-23 [2] CRAN (R 4.4.0)
+##  package       * version     date (UTC) lib source
+##  Biobase         2.63.1      2024-03-29 [1] Bioconductor 3.19 (R 4.5.0)
+##  BiocBaseUtils   1.5.1       2024-03-08 [1] Bioconductor 3.19 (R 4.5.0)
+##  BiocCheck       1.39.27     2024-03-25 [1] Bioconductor 3.19 (R 4.5.0)
+##  BiocFileCache   2.11.2      2024-03-27 [1] Bioconductor 3.19 (R 4.5.0)
+##  BiocGenerics    0.49.1      2023-11-01 [1] Bioconductor
+##  BiocManager     1.30.22     2023-08-08 [1] CRAN (R 4.5.0)
+##  BiocStyle     * 2.31.0      2023-10-24 [1] Bioconductor
+##  biocViews       1.71.1      2023-10-25 [1] Bioconductor
+##  bit             4.0.5       2022-11-15 [1] CRAN (R 4.4.0)
+##  bit64           4.0.5       2020-08-30 [1] CRAN (R 4.4.0)
+##  bitops          1.0-7       2021-04-24 [1] CRAN (R 4.4.0)
+##  blob            1.2.4       2023-03-17 [1] CRAN (R 4.4.0)
+##  bookdown        0.38        2024-03-04 [1] CRAN (R 4.5.0)
+##  bslib           0.7.0       2024-03-29 [2] CRAN (R 4.5.0)
+##  cachem          1.0.8       2023-05-01 [2] CRAN (R 4.5.0)
+##  cli             3.6.2       2023-12-11 [2] CRAN (R 4.5.0)
+##  codetools       0.2-19      2023-02-01 [3] CRAN (R 4.5.0)
+##  curl            5.2.1       2024-03-01 [2] CRAN (R 4.5.0)
+##  data.table    * 1.15.4      2024-03-30 [1] CRAN (R 4.5.0)
+##  DBI             1.2.2       2024-02-16 [1] CRAN (R 4.5.0)
+##  dbplyr          2.5.0       2024-03-19 [1] CRAN (R 4.5.0)
+##  desc            1.4.3       2023-12-10 [2] CRAN (R 4.5.0)
+##  devoptera     * 0.99.1      2024-04-01 [1] Bioconductor
+##  devtools        2.4.5       2022-10-11 [2] CRAN (R 4.5.0)
+##  digest          0.6.35      2024-03-11 [2] CRAN (R 4.5.0)
+##  dplyr           1.1.4       2023-11-17 [1] CRAN (R 4.4.0)
+##  ellipsis        0.3.2       2021-04-29 [2] CRAN (R 4.5.0)
+##  evaluate        0.23        2023-11-01 [2] CRAN (R 4.5.0)
+##  fansi           1.0.6       2023-12-08 [2] CRAN (R 4.5.0)
+##  fastmap         1.1.1       2023-02-24 [2] CRAN (R 4.5.0)
+##  filelock        1.0.3       2023-12-11 [1] CRAN (R 4.4.0)
+##  fs              1.6.3       2023-07-20 [2] CRAN (R 4.5.0)
+##  generics        0.1.3       2022-07-05 [1] CRAN (R 4.4.0)
+##  glue            1.7.0       2024-01-09 [2] CRAN (R 4.5.0)
+##  graph           1.81.0      2023-10-24 [1] Bioconductor
+##  here            1.0.1       2020-12-13 [1] CRAN (R 4.4.0)
+##  htmltools       0.5.8       2024-03-25 [2] CRAN (R 4.5.0)
+##  htmlwidgets     1.6.4       2023-12-06 [2] CRAN (R 4.5.0)
+##  httpuv          1.6.15      2024-03-26 [2] CRAN (R 4.5.0)
+##  httr            1.4.7       2023-08-15 [2] CRAN (R 4.5.0)
+##  httr2           1.0.0       2023-11-14 [2] CRAN (R 4.5.0)
+##  jquerylib       0.1.4       2021-04-26 [2] CRAN (R 4.5.0)
+##  jsonlite        1.8.8       2023-12-04 [2] CRAN (R 4.5.0)
+##  knitr           1.45        2023-10-30 [2] CRAN (R 4.5.0)
+##  later           1.3.2       2023-12-06 [2] CRAN (R 4.5.0)
+##  lifecycle       1.0.4       2023-11-07 [2] CRAN (R 4.5.0)
+##  magrittr        2.0.3       2022-03-30 [2] CRAN (R 4.5.0)
+##  memoise         2.0.1       2021-11-26 [2] CRAN (R 4.5.0)
+##  mime            0.12        2021-09-28 [2] CRAN (R 4.5.0)
+##  miniUI          0.1.1.1     2018-05-18 [2] CRAN (R 4.5.0)
+##  pillar          1.9.0       2023-03-22 [2] CRAN (R 4.5.0)
+##  pkgbuild        1.4.4       2024-03-17 [2] CRAN (R 4.5.0)
+##  pkgconfig       2.0.3       2019-09-22 [2] CRAN (R 4.5.0)
+##  pkgdown         2.0.7       2022-12-14 [1] CRAN (R 4.5.0)
+##  pkgload         1.3.4       2024-01-16 [2] CRAN (R 4.5.0)
+##  profvis         0.3.8       2023-05-02 [2] CRAN (R 4.5.0)
+##  promises        1.2.1       2023-08-10 [2] CRAN (R 4.5.0)
+##  purrr           1.0.2       2023-08-10 [2] CRAN (R 4.5.0)
+##  R.methodsS3     1.8.2       2022-06-13 [1] CRAN (R 4.4.0)
+##  R.oo            1.26.0      2024-01-24 [1] CRAN (R 4.4.0)
+##  R.utils         2.12.3      2023-11-18 [1] CRAN (R 4.4.0)
+##  R6              2.5.1       2021-08-19 [2] CRAN (R 4.5.0)
+##  ragg            1.3.0       2024-03-13 [2] CRAN (R 4.5.0)
+##  rappdirs        0.3.3       2021-01-31 [2] CRAN (R 4.5.0)
+##  RBGL            1.79.0      2023-10-24 [1] Bioconductor
+##  Rcpp            1.0.12      2024-01-09 [2] CRAN (R 4.5.0)
+##  RCurl           1.98-1.14   2024-01-09 [1] CRAN (R 4.4.0)
+##  remotes         2.5.0.9000  2024-04-01 [1] Github (r-lib/remotes@ac483e7)
+##  rlang         * 1.1.3       2024-01-10 [2] CRAN (R 4.5.0)
+##  rmarkdown       2.26        2024-03-05 [1] CRAN (R 4.5.0)
+##  rprojroot       2.0.4       2023-11-05 [2] CRAN (R 4.5.0)
+##  RSQLite         2.3.6       2024-03-31 [1] CRAN (R 4.5.0)
+##  rstudioapi      0.16.0      2024-03-24 [2] CRAN (R 4.5.0)
+##  RUnit           0.4.33      2024-02-22 [1] CRAN (R 4.5.0)
+##  sass            0.4.9       2024-03-15 [2] CRAN (R 4.5.0)
+##  sessioninfo     1.2.2       2021-12-06 [2] CRAN (R 4.5.0)
+##  shiny           1.8.1       2024-03-26 [2] CRAN (R 4.5.0)
+##  stringdist      0.9.12      2023-11-28 [1] CRAN (R 4.4.0)
+##  stringi         1.8.3       2023-12-11 [2] CRAN (R 4.5.0)
+##  stringr         1.5.1       2023-11-14 [2] CRAN (R 4.5.0)
+##  systemfonts     1.0.6       2024-03-07 [2] CRAN (R 4.5.0)
+##  textshaping     0.3.7       2023-10-09 [2] CRAN (R 4.5.0)
+##  tibble          3.2.1       2023-03-20 [2] CRAN (R 4.5.0)
+##  tidyselect      1.2.1       2024-03-11 [1] CRAN (R 4.5.0)
+##  urlchecker      1.0.1       2021-11-30 [2] CRAN (R 4.5.0)
+##  usethis         2.2.3       2024-02-19 [2] CRAN (R 4.5.0)
+##  utf8            1.2.4       2023-10-22 [2] CRAN (R 4.5.0)
+##  vctrs           0.6.5       2023-12-01 [2] CRAN (R 4.5.0)
+##  xfun            0.43        2024-03-25 [2] CRAN (R 4.5.0)
+##  XML             3.99-0.16.1 2024-01-22 [1] CRAN (R 4.4.0)
+##  xtable          1.8-4       2019-04-21 [2] CRAN (R 4.5.0)
+##  yaml            2.3.8       2023-12-11 [2] CRAN (R 4.5.0)
 ## 
 ##  [1] /__w/_temp/Library
 ##  [2] /usr/local/lib/R/site-library
diff --git a/articles/docker.html b/articles/docker.html
index 30fdf19..fa9a0f3 100644
--- a/articles/docker.html
+++ b/articles/docker.html
@@ -92,7 +92,7 @@ 

             
             

 

-Vignette updated: Dec-10-2023

+Vignette updated: Apr-01-2024

 

       
       Source: vignettes/docker.Rmd
@@ -168,9 +168,9 @@ 
Session Info
 utils::sessionInfo()

-
## R Under development (unstable) (2023-11-22 r85609)
+
## R Under development (unstable) (2024-03-28 r86224)
 ## Platform: x86_64-pc-linux-gnu
-## Running under: Ubuntu 22.04.3 LTS
+## Running under: Ubuntu 22.04.4 LTS
 ## 
 ## Matrix products: default
 ## BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 
@@ -194,37 +194,37 @@ 
Session Info## [1] devoptera_0.99.1
 ## 
 ## loaded via a namespace (and not attached):
-##  [1] tidyselect_1.2.0     dplyr_1.1.4          blob_1.2.4          
-##  [4] filelock_1.0.2       R.utils_2.12.3       bitops_1.0-7        
-##  [7] fastmap_1.1.1        RCurl_1.98-1.13      BiocFileCache_2.11.1
-## [10] promises_1.2.1       XML_3.99-0.16        digest_0.6.33       
+##  [1] tidyselect_1.2.1     dplyr_1.1.4          blob_1.2.4          
+##  [4] filelock_1.0.3       R.utils_2.12.3       bitops_1.0-7        
+##  [7] fastmap_1.1.1        RCurl_1.98-1.14      BiocFileCache_2.11.2
+## [10] promises_1.2.1       XML_3.99-0.16.1      digest_0.6.35       
 ## [13] mime_0.12            lifecycle_1.0.4      ellipsis_0.3.2      
-## [16] RSQLite_2.3.4        magrittr_2.0.3       compiler_4.4.0      
-## [19] rlang_1.1.2          sass_0.4.8           tools_4.4.0         
-## [22] utf8_1.2.4           yaml_2.3.7           data.table_1.14.10  
+## [16] RSQLite_2.3.6        magrittr_2.0.3       compiler_4.5.0      
+## [19] rlang_1.1.3          sass_0.4.9           tools_4.5.0         
+## [22] utf8_1.2.4           yaml_2.3.8           data.table_1.15.4   
 ## [25] knitr_1.45           htmlwidgets_1.6.4    bit_4.0.5           
-## [28] pkgbuild_1.4.3       curl_5.2.0           here_1.0.1          
-## [31] pkgload_1.3.3        miniUI_0.1.1.1       purrr_1.0.2         
-## [34] BiocGenerics_0.49.1  desc_1.4.3           R.oo_1.25.0         
-## [37] stats4_4.4.0         fansi_1.0.6          urlchecker_1.0.1    
-## [40] profvis_0.3.8        xtable_1.8-4         cli_3.6.1           
-## [43] rmarkdown_2.25       ragg_1.2.6           generics_0.1.3      
-## [46] remotes_2.4.2.9000   stringdist_0.9.12    rstudioapi_0.15.0   
-## [49] httr_1.4.7           sessioninfo_1.2.2    BiocBaseUtils_1.5.0 
-## [52] RUnit_0.4.32         DBI_1.1.3            cachem_1.0.8        
-## [55] stringr_1.5.1        parallel_4.4.0       BiocManager_1.30.22 
+## [28] pkgbuild_1.4.4       curl_5.2.1           here_1.0.1          
+## [31] pkgload_1.3.4        miniUI_0.1.1.1       purrr_1.0.2         
+## [34] BiocGenerics_0.49.1  desc_1.4.3           R.oo_1.26.0         
+## [37] stats4_4.5.0         fansi_1.0.6          urlchecker_1.0.1    
+## [40] profvis_0.3.8        xtable_1.8-4         cli_3.6.2           
+## [43] rmarkdown_2.26       ragg_1.3.0           generics_0.1.3      
+## [46] remotes_2.5.0.9000   stringdist_0.9.12    rstudioapi_0.16.0   
+## [49] httr_1.4.7           sessioninfo_1.2.2    BiocBaseUtils_1.5.1 
+## [52] RUnit_0.4.33         DBI_1.2.2            cachem_1.0.8        
+## [55] stringr_1.5.1        parallel_4.5.0       BiocManager_1.30.22 
 ## [58] vctrs_0.6.5          devtools_2.4.5       jsonlite_1.8.8      
-## [61] bit64_4.0.5          RBGL_1.79.0          systemfonts_1.0.5   
-## [64] jquerylib_0.1.4      glue_1.6.2           pkgdown_2.0.7       
-## [67] codetools_0.2-19     stringi_1.8.2        later_1.3.2         
-## [70] BiocCheck_1.39.0     tibble_3.2.1         pillar_1.9.0        
-## [73] htmltools_0.5.7      graph_1.81.0         R6_2.5.1            
-## [76] dbplyr_2.4.0         textshaping_0.3.7    rprojroot_2.0.4     
-## [79] evaluate_0.23        shiny_1.8.0          Biobase_2.63.0      
-## [82] R.methodsS3_1.8.2    memoise_2.0.1        httpuv_1.6.13       
-## [85] bslib_0.6.1          Rcpp_1.0.11          xfun_0.41           
-## [88] usethis_2.2.2        fs_1.6.3             biocViews_1.71.1    
-## [91] pkgconfig_2.0.3

+## [61] bit64_4.0.5          RBGL_1.79.0          systemfonts_1.0.6   
+## [64] jquerylib_0.1.4      glue_1.7.0           pkgdown_2.0.7       
+## [67] codetools_0.2-19     stringi_1.8.3        later_1.3.2         
+## [70] BiocCheck_1.39.27    tibble_3.2.1         pillar_1.9.0        
+## [73] rappdirs_0.3.3       htmltools_0.5.8      graph_1.81.0        
+## [76] R6_2.5.1             dbplyr_2.5.0         httr2_1.0.0         
+## [79] textshaping_0.3.7    rprojroot_2.0.4      evaluate_0.23       
+## [82] shiny_1.8.1          Biobase_2.63.1       R.methodsS3_1.8.2   
+## [85] memoise_2.0.1        httpuv_1.6.15        bslib_0.7.0         
+## [88] Rcpp_1.0.12          xfun_0.43            usethis_2.2.3       
+## [91] fs_1.6.3             biocViews_1.71.1     pkgconfig_2.0.3

 


 

   
diff --git a/articles/make_hex.html b/articles/make_hex.html
index 291c60d..cdb1694 100644
--- a/articles/make_hex.html
+++ b/articles/make_hex.html
@@ -92,7 +92,7 @@ 

             
             

 

-Vignette updated: Dec-10-2023

+Vignette updated: Apr-01-2024

 

       
       Source: vignettes/make_hex.Rmd
@@ -180,136 +180,138 @@ 
Session Infodevoptera::session_info()
## ─ Session info ───────────────────────────────────────────────────────────────
 ##  setting  value
-##  version  R Under development (unstable) (2023-11-22 r85609)
-##  os       Ubuntu 22.04.3 LTS
+##  version  R Under development (unstable) (2024-03-28 r86224)
+##  os       Ubuntu 22.04.4 LTS
 ##  system   x86_64, linux-gnu
 ##  ui       X11
 ##  language en
 ##  collate  en_US.UTF-8
 ##  ctype    en_US.UTF-8
 ##  tz       UTC
-##  date     2023-12-10
+##  date     2024-04-01
 ##  pandoc   3.1.1 @ /usr/local/bin/ (via rmarkdown)
 ## 
 ## ─ Packages ───────────────────────────────────────────────────────────────────
-##  package       * version    date (UTC) lib source
-##  badger          0.2.3      2023-01-28 [1] CRAN (R 4.4.0)
-##  Biobase         2.63.0     2023-10-24 [1] Bioconductor
-##  BiocBaseUtils   1.5.0      2023-10-24 [1] Bioconductor
-##  BiocCheck       1.39.0     2023-10-24 [1] Bioconductor
-##  BiocFileCache   2.11.1     2023-10-26 [1] Bioconductor
-##  BiocGenerics    0.49.1     2023-11-01 [1] Bioconductor
-##  BiocManager     1.30.22    2023-08-08 [1] CRAN (R 4.4.0)
-##  BiocStyle     * 2.31.0     2023-10-24 [1] Bioconductor
-##  biocViews       1.71.1     2023-10-25 [1] Bioconductor
-##  bit             4.0.5      2022-11-15 [1] CRAN (R 4.4.0)
-##  bit64           4.0.5      2020-08-30 [1] CRAN (R 4.4.0)
-##  bitops          1.0-7      2021-04-24 [1] CRAN (R 4.4.0)
-##  blob            1.2.4      2023-03-17 [1] CRAN (R 4.4.0)
-##  bookdown        0.37       2023-12-01 [1] CRAN (R 4.4.0)
-##  bslib           0.6.1      2023-11-28 [2] CRAN (R 4.4.0)
-##  cachem          1.0.8      2023-05-01 [2] CRAN (R 4.4.0)
-##  cli             3.6.1      2023-03-23 [2] CRAN (R 4.4.0)
-##  codetools       0.2-19     2023-02-01 [3] CRAN (R 4.4.0)
-##  colorspace      2.1-0      2023-01-23 [1] CRAN (R 4.4.0)
-##  curl            5.2.0      2023-12-08 [2] CRAN (R 4.4.0)
-##  data.table      1.14.10    2023-12-08 [1] CRAN (R 4.4.0)
-##  DBI             1.1.3      2022-06-18 [1] CRAN (R 4.4.0)
-##  dbplyr          2.4.0      2023-10-26 [1] CRAN (R 4.4.0)
-##  desc            1.4.3      2023-12-10 [1] CRAN (R 4.4.0)
-##  devoptera     * 0.99.1     2023-12-10 [1] Bioconductor
-##  devtools        2.4.5      2022-10-11 [2] CRAN (R 4.4.0)
-##  digest          0.6.33     2023-07-07 [2] CRAN (R 4.4.0)
-##  dlstats         0.1.7      2023-05-24 [1] CRAN (R 4.4.0)
-##  dplyr           1.1.4      2023-11-17 [1] CRAN (R 4.4.0)
-##  ellipsis        0.3.2      2021-04-29 [2] CRAN (R 4.4.0)
-##  evaluate        0.23       2023-11-01 [2] CRAN (R 4.4.0)
-##  fansi           1.0.6      2023-12-08 [2] CRAN (R 4.4.0)
-##  farver          2.1.1      2022-07-06 [1] CRAN (R 4.4.0)
-##  fastmap         1.1.1      2023-02-24 [2] CRAN (R 4.4.0)
-##  filelock        1.0.2      2018-10-05 [1] CRAN (R 4.4.0)
-##  fs              1.6.3      2023-07-20 [2] CRAN (R 4.4.0)
-##  generics        0.1.3      2022-07-05 [1] CRAN (R 4.4.0)
-##  ggfun           0.1.3      2023-09-15 [1] CRAN (R 4.4.0)
-##  ggimage         0.3.3      2023-06-19 [1] CRAN (R 4.4.0)
-##  ggplot2         3.4.4      2023-10-12 [1] CRAN (R 4.4.0)
-##  ggplotify       0.1.2      2023-08-09 [1] CRAN (R 4.4.0)
-##  glue            1.6.2      2022-02-24 [2] CRAN (R 4.4.0)
-##  graph           1.81.0     2023-10-24 [1] Bioconductor
-##  gridGraphics    0.5-1      2020-12-13 [1] CRAN (R 4.4.0)
-##  gtable          0.3.4      2023-08-21 [1] CRAN (R 4.4.0)
-##  here            1.0.1      2020-12-13 [1] CRAN (R 4.4.0)
-##  hexbin          1.28.3     2023-03-21 [1] CRAN (R 4.4.0)
-##  hexSticker      0.4.9      2020-12-05 [1] CRAN (R 4.4.0)
-##  highr           0.10       2022-12-22 [2] CRAN (R 4.4.0)
-##  htmltools       0.5.7      2023-11-03 [2] CRAN (R 4.4.0)
-##  htmlwidgets     1.6.4      2023-12-06 [2] CRAN (R 4.4.0)
-##  httpuv          1.6.13     2023-12-06 [2] CRAN (R 4.4.0)
-##  httr            1.4.7      2023-08-15 [2] CRAN (R 4.4.0)
-##  jquerylib       0.1.4      2021-04-26 [2] CRAN (R 4.4.0)
-##  jsonlite        1.8.8      2023-12-04 [2] CRAN (R 4.4.0)
-##  knitr           1.45       2023-10-30 [2] CRAN (R 4.4.0)
-##  labeling        0.4.3      2023-08-29 [1] CRAN (R 4.4.0)
-##  later           1.3.2      2023-12-06 [2] CRAN (R 4.4.0)
-##  lattice         0.22-5     2023-10-24 [3] CRAN (R 4.4.0)
-##  lifecycle       1.0.4      2023-11-07 [2] CRAN (R 4.4.0)
-##  magick          2.8.1      2023-10-22 [1] CRAN (R 4.4.0)
-##  magrittr        2.0.3      2022-03-30 [2] CRAN (R 4.4.0)
-##  memoise         2.0.1      2021-11-26 [2] CRAN (R 4.4.0)
-##  mime            0.12       2021-09-28 [2] CRAN (R 4.4.0)
-##  miniUI          0.1.1.1    2018-05-18 [2] CRAN (R 4.4.0)
-##  munsell         0.5.0      2018-06-12 [1] CRAN (R 4.4.0)
-##  pillar          1.9.0      2023-03-22 [2] CRAN (R 4.4.0)
-##  pkgbuild        1.4.3      2023-12-10 [1] CRAN (R 4.4.0)
-##  pkgconfig       2.0.3      2019-09-22 [2] CRAN (R 4.4.0)
-##  pkgdown         2.0.7      2022-12-14 [1] CRAN (R 4.4.0)
-##  pkgload         1.3.3      2023-09-22 [2] CRAN (R 4.4.0)
-##  profvis         0.3.8      2023-05-02 [2] CRAN (R 4.4.0)
-##  promises        1.2.1      2023-08-10 [2] CRAN (R 4.4.0)
-##  purrr           1.0.2      2023-08-10 [2] CRAN (R 4.4.0)
-##  R.methodsS3     1.8.2      2022-06-13 [1] CRAN (R 4.4.0)
-##  R.oo            1.25.0     2022-06-12 [1] CRAN (R 4.4.0)
-##  R.utils         2.12.3     2023-11-18 [1] CRAN (R 4.4.0)
-##  R6              2.5.1      2021-08-19 [2] CRAN (R 4.4.0)
-##  ragg            1.2.6      2023-10-10 [2] CRAN (R 4.4.0)
-##  RBGL            1.79.0     2023-10-24 [1] Bioconductor
-##  RColorBrewer    1.1-3      2022-04-03 [1] CRAN (R 4.4.0)
-##  Rcpp            1.0.11     2023-07-06 [2] CRAN (R 4.4.0)
-##  RCurl           1.98-1.13  2023-11-02 [1] CRAN (R 4.4.0)
-##  remotes         2.4.2.9000 2023-12-10 [1] Github (r-lib/remotes@6fe8836)
-##  renv            1.0.3      2023-09-19 [1] CRAN (R 4.4.0)
-##  rlang           1.1.2      2023-11-04 [2] CRAN (R 4.4.0)
-##  rmarkdown       2.25       2023-09-18 [1] CRAN (R 4.4.0)
-##  rprojroot       2.0.4      2023-11-05 [2] CRAN (R 4.4.0)
-##  RSQLite         2.3.4      2023-12-08 [1] CRAN (R 4.4.0)
-##  rstudioapi      0.15.0     2023-07-07 [2] CRAN (R 4.4.0)
-##  RUnit           0.4.32     2018-05-18 [1] CRAN (R 4.4.0)
-##  rvcheck         0.2.1      2021-10-22 [1] CRAN (R 4.4.0)
-##  rworkflows      1.0.1      2023-12-10 [1] Github (neurogenomics/rworkflows@42a1b34)
-##  sass            0.4.8      2023-12-06 [2] CRAN (R 4.4.0)
-##  scales          1.3.0      2023-11-28 [1] CRAN (R 4.4.0)
-##  sessioninfo     1.2.2      2021-12-06 [2] CRAN (R 4.4.0)
-##  shiny           1.8.0      2023-11-17 [2] CRAN (R 4.4.0)
-##  showtext        0.9-6      2023-05-03 [1] CRAN (R 4.4.0)
-##  showtextdb      3.0        2020-06-04 [1] CRAN (R 4.4.0)
-##  stringdist      0.9.12     2023-11-28 [1] CRAN (R 4.4.0)
-##  stringi         1.8.2      2023-11-23 [2] CRAN (R 4.4.0)
-##  stringr         1.5.1      2023-11-14 [2] CRAN (R 4.4.0)
-##  sysfonts        0.8.8      2022-03-13 [1] CRAN (R 4.4.0)
-##  systemfonts     1.0.5      2023-10-09 [2] CRAN (R 4.4.0)
-##  textshaping     0.3.7      2023-10-09 [2] CRAN (R 4.4.0)
-##  tibble          3.2.1      2023-03-20 [2] CRAN (R 4.4.0)
-##  tidyselect      1.2.0      2022-10-10 [1] CRAN (R 4.4.0)
-##  urlchecker      1.0.1      2021-11-30 [2] CRAN (R 4.4.0)
-##  usethis         2.2.2      2023-07-06 [2] CRAN (R 4.4.0)
-##  utf8            1.2.4      2023-10-22 [2] CRAN (R 4.4.0)
-##  vctrs           0.6.5      2023-12-01 [2] CRAN (R 4.4.0)
-##  withr           2.5.2      2023-10-30 [2] CRAN (R 4.4.0)
-##  xfun            0.41       2023-11-01 [2] CRAN (R 4.4.0)
-##  XML             3.99-0.16  2023-11-29 [1] CRAN (R 4.4.0)
-##  xtable          1.8-4      2019-04-21 [2] CRAN (R 4.4.0)
-##  yaml            2.3.7      2023-01-23 [2] CRAN (R 4.4.0)
-##  yulab.utils     0.1.0      2023-09-20 [1] CRAN (R 4.4.0)
+##  package       * version     date (UTC) lib source
+##  badger          0.2.3       2023-01-28 [1] CRAN (R 4.4.0)
+##  Biobase         2.63.1      2024-03-29 [1] Bioconductor 3.19 (R 4.5.0)
+##  BiocBaseUtils   1.5.1       2024-03-08 [1] Bioconductor 3.19 (R 4.5.0)
+##  BiocCheck       1.39.27     2024-03-25 [1] Bioconductor 3.19 (R 4.5.0)
+##  BiocFileCache   2.11.2      2024-03-27 [1] Bioconductor 3.19 (R 4.5.0)
+##  BiocGenerics    0.49.1      2023-11-01 [1] Bioconductor
+##  BiocManager     1.30.22     2023-08-08 [1] CRAN (R 4.5.0)
+##  BiocStyle     * 2.31.0      2023-10-24 [1] Bioconductor
+##  biocViews       1.71.1      2023-10-25 [1] Bioconductor
+##  bit             4.0.5       2022-11-15 [1] CRAN (R 4.4.0)
+##  bit64           4.0.5       2020-08-30 [1] CRAN (R 4.4.0)
+##  bitops          1.0-7       2021-04-24 [1] CRAN (R 4.4.0)
+##  blob            1.2.4       2023-03-17 [1] CRAN (R 4.4.0)
+##  bookdown        0.38        2024-03-04 [1] CRAN (R 4.5.0)
+##  bslib           0.7.0       2024-03-29 [2] CRAN (R 4.5.0)
+##  cachem          1.0.8       2023-05-01 [2] CRAN (R 4.5.0)
+##  cli             3.6.2       2023-12-11 [2] CRAN (R 4.5.0)
+##  codetools       0.2-19      2023-02-01 [3] CRAN (R 4.5.0)
+##  colorspace      2.1-0       2023-01-23 [1] CRAN (R 4.4.0)
+##  curl            5.2.1       2024-03-01 [2] CRAN (R 4.5.0)
+##  data.table      1.15.4      2024-03-30 [1] CRAN (R 4.5.0)
+##  DBI             1.2.2       2024-02-16 [1] CRAN (R 4.5.0)
+##  dbplyr          2.5.0       2024-03-19 [1] CRAN (R 4.5.0)
+##  desc            1.4.3       2023-12-10 [2] CRAN (R 4.5.0)
+##  devoptera     * 0.99.1      2024-04-01 [1] Bioconductor
+##  devtools        2.4.5       2022-10-11 [2] CRAN (R 4.5.0)
+##  digest          0.6.35      2024-03-11 [2] CRAN (R 4.5.0)
+##  dlstats         0.1.7       2023-05-24 [1] CRAN (R 4.4.0)
+##  dplyr           1.1.4       2023-11-17 [1] CRAN (R 4.4.0)
+##  ellipsis        0.3.2       2021-04-29 [2] CRAN (R 4.5.0)
+##  evaluate        0.23        2023-11-01 [2] CRAN (R 4.5.0)
+##  fansi           1.0.6       2023-12-08 [2] CRAN (R 4.5.0)
+##  farver          2.1.1       2022-07-06 [1] CRAN (R 4.4.0)
+##  fastmap         1.1.1       2023-02-24 [2] CRAN (R 4.5.0)
+##  filelock        1.0.3       2023-12-11 [1] CRAN (R 4.4.0)
+##  fs              1.6.3       2023-07-20 [2] CRAN (R 4.5.0)
+##  generics        0.1.3       2022-07-05 [1] CRAN (R 4.4.0)
+##  ggfun           0.1.4       2024-01-19 [1] CRAN (R 4.4.0)
+##  ggimage         0.3.3       2023-06-19 [1] CRAN (R 4.4.0)
+##  ggplot2         3.5.0       2024-02-23 [1] CRAN (R 4.5.0)
+##  ggplotify       0.1.2       2023-08-09 [1] CRAN (R 4.4.0)
+##  glue            1.7.0       2024-01-09 [2] CRAN (R 4.5.0)
+##  graph           1.81.0      2023-10-24 [1] Bioconductor
+##  gridGraphics    0.5-1       2020-12-13 [1] CRAN (R 4.4.0)
+##  gtable          0.3.4       2023-08-21 [1] CRAN (R 4.4.0)
+##  here            1.0.1       2020-12-13 [1] CRAN (R 4.4.0)
+##  hexbin          1.28.3      2023-03-21 [1] CRAN (R 4.4.0)
+##  hexSticker      0.4.9       2020-12-05 [1] CRAN (R 4.5.0)
+##  highr           0.10        2022-12-22 [2] CRAN (R 4.5.0)
+##  htmltools       0.5.8       2024-03-25 [2] CRAN (R 4.5.0)
+##  htmlwidgets     1.6.4       2023-12-06 [2] CRAN (R 4.5.0)
+##  httpuv          1.6.15      2024-03-26 [2] CRAN (R 4.5.0)
+##  httr            1.4.7       2023-08-15 [2] CRAN (R 4.5.0)
+##  httr2           1.0.0       2023-11-14 [2] CRAN (R 4.5.0)
+##  jquerylib       0.1.4       2021-04-26 [2] CRAN (R 4.5.0)
+##  jsonlite        1.8.8       2023-12-04 [2] CRAN (R 4.5.0)
+##  knitr           1.45        2023-10-30 [2] CRAN (R 4.5.0)
+##  labeling        0.4.3       2023-08-29 [1] CRAN (R 4.4.0)
+##  later           1.3.2       2023-12-06 [2] CRAN (R 4.5.0)
+##  lattice         0.22-6      2024-03-20 [3] CRAN (R 4.5.0)
+##  lifecycle       1.0.4       2023-11-07 [2] CRAN (R 4.5.0)
+##  magick          2.8.3       2024-02-18 [1] CRAN (R 4.5.0)
+##  magrittr        2.0.3       2022-03-30 [2] CRAN (R 4.5.0)
+##  memoise         2.0.1       2021-11-26 [2] CRAN (R 4.5.0)
+##  mime            0.12        2021-09-28 [2] CRAN (R 4.5.0)
+##  miniUI          0.1.1.1     2018-05-18 [2] CRAN (R 4.5.0)
+##  munsell         0.5.0       2018-06-12 [1] CRAN (R 4.4.0)
+##  pillar          1.9.0       2023-03-22 [2] CRAN (R 4.5.0)
+##  pkgbuild        1.4.4       2024-03-17 [2] CRAN (R 4.5.0)
+##  pkgconfig       2.0.3       2019-09-22 [2] CRAN (R 4.5.0)
+##  pkgdown         2.0.7       2022-12-14 [1] CRAN (R 4.5.0)
+##  pkgload         1.3.4       2024-01-16 [2] CRAN (R 4.5.0)
+##  profvis         0.3.8       2023-05-02 [2] CRAN (R 4.5.0)
+##  promises        1.2.1       2023-08-10 [2] CRAN (R 4.5.0)
+##  purrr           1.0.2       2023-08-10 [2] CRAN (R 4.5.0)
+##  R.methodsS3     1.8.2       2022-06-13 [1] CRAN (R 4.4.0)
+##  R.oo            1.26.0      2024-01-24 [1] CRAN (R 4.4.0)
+##  R.utils         2.12.3      2023-11-18 [1] CRAN (R 4.4.0)
+##  R6              2.5.1       2021-08-19 [2] CRAN (R 4.5.0)
+##  ragg            1.3.0       2024-03-13 [2] CRAN (R 4.5.0)
+##  rappdirs        0.3.3       2021-01-31 [2] CRAN (R 4.5.0)
+##  RBGL            1.79.0      2023-10-24 [1] Bioconductor
+##  RColorBrewer    1.1-3       2022-04-03 [1] CRAN (R 4.4.0)
+##  Rcpp            1.0.12      2024-01-09 [2] CRAN (R 4.5.0)
+##  RCurl           1.98-1.14   2024-01-09 [1] CRAN (R 4.4.0)
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diff --git a/index.html b/index.html
index 82e5d82..3744ad6 100644
--- a/index.html
+++ b/index.html
@@ -141,118 +141,120 @@ 
Contactdevoptera::session_info()
## [1m[36m─ Session info ───────────────────────────────────────────────────────────────[39m[22m
 ##  [3m[90msetting [39m[23m [3m[90mvalue[39m[23m
-##  version  R Under development (unstable) (2023-11-22 r85609)
-##  os       Ubuntu 22.04.3 LTS
+##  version  R Under development (unstable) (2024-03-28 r86224)
+##  os       Ubuntu 22.04.4 LTS
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-##  date     2023-12-10
+##  date     2024-04-01
 ##  pandoc   3.1.1 @ /usr/local/bin/ (via rmarkdown)
 ## 
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-## 
-## [1m[36m──────────────────────────────────────────────────────────────────────────────[39m[22m
+## [3m[90mpackage [39m[23m [3m[90m*[39m[23m [3m[90mversion [39m[23m [3m[90mdate (UTC)[39m[23m [3m[90mlib[39m[23m [3m[90msource[39m[23m +## badger 0.2.3 [90m2023-01-28[39m [90m[1][39m [90mCRAN (R 4.4.0)[39m +## Biobase 2.63.1 [90m2024-03-29[39m [90m[1][39m [90mBioconductor 3.19 (R 4.5.0)[39m +## BiocBaseUtils 1.5.1 [90m2024-03-08[39m [90m[1][39m [90mBioconductor 3.19 (R 4.5.0)[39m +## BiocCheck 1.39.27 [90m2024-03-25[39m [90m[1][39m [90mBioconductor 3.19 (R 4.5.0)[39m +## BiocFileCache 2.11.2 [90m2024-03-27[39m [90m[1][39m [90mBioconductor 3.19 (R 4.5.0)[39m +## BiocGenerics 0.49.1 [90m2023-11-01[39m [90m[1][39m [90mBioconductor[39m +## BiocManager 1.30.22 [90m2023-08-08[39m [90m[1][39m [90mCRAN (R 4.5.0)[39m +## biocViews 1.71.1 [90m2023-10-25[39m [90m[1][39m [90mBioconductor[39m +## bit 4.0.5 [90m2022-11-15[39m [90m[1][39m [90mCRAN (R 4.4.0)[39m +## bit64 4.0.5 [90m2020-08-30[39m [90m[1][39m [90mCRAN (R 4.4.0)[39m +## bitops 1.0-7 [90m2021-04-24[39m [90m[1][39m [90mCRAN (R 4.4.0)[39m +## blob 1.2.4 [90m2023-03-17[39m [90m[1][39m [90mCRAN (R 4.4.0)[39m +## cachem 1.0.8 [90m2023-05-01[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## cli 3.6.2 [90m2023-12-11[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## codetools 0.2-19 [90m2023-02-01[39m [90m[3][39m [90mCRAN (R 4.5.0)[39m +## colorspace 2.1-0 [90m2023-01-23[39m [90m[1][39m [90mCRAN (R 4.4.0)[39m +## curl 5.2.1 [90m2024-03-01[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## data.table 1.15.4 [90m2024-03-30[39m [90m[1][39m [90mCRAN (R 4.5.0)[39m +## DBI 1.2.2 [90m2024-02-16[39m [90m[1][39m [90mCRAN (R 4.5.0)[39m +## dbplyr 2.5.0 [90m2024-03-19[39m [90m[1][39m [90mCRAN (R 4.5.0)[39m +## desc 1.4.3 [90m2023-12-10[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## devoptera 0.99.1 [90m2024-04-01[39m [90m[1][39m [90mBioconductor[39m +## devtools 2.4.5 [90m2022-10-11[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## digest 0.6.35 [90m2024-03-11[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## dlstats 0.1.7 [90m2023-05-24[39m [90m[1][39m [90mCRAN (R 4.4.0)[39m 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htmlwidgets 1.6.4 [90m2023-12-06[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## httpuv 1.6.15 [90m2024-03-26[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## httr 1.4.7 [90m2023-08-15[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## httr2 1.0.0 [90m2023-11-14[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## jsonlite 1.8.8 [90m2023-12-04[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## knitr 1.45 [90m2023-10-30[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## later 1.3.2 [90m2023-12-06[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## lifecycle 1.0.4 [90m2023-11-07[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## magrittr 2.0.3 [90m2022-03-30[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## memoise 2.0.1 [90m2021-11-26[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## mime 0.12 [90m2021-09-28[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## miniUI 0.1.1.1 [90m2018-05-18[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## munsell 0.5.0 [90m2018-06-12[39m [90m[1][39m [90mCRAN (R 4.4.0)[39m +## pillar 1.9.0 [90m2023-03-22[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## pkgbuild 1.4.4 [90m2024-03-17[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## pkgconfig 2.0.3 [90m2019-09-22[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## pkgload 1.3.4 [90m2024-01-16[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## profvis 0.3.8 [90m2023-05-02[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## promises 1.2.1 [90m2023-08-10[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## purrr 1.0.2 [90m2023-08-10[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## R.methodsS3 1.8.2 [90m2022-06-13[39m [90m[1][39m [90mCRAN (R 4.4.0)[39m +## R.oo 1.26.0 [90m2024-01-24[39m [90m[1][39m [90mCRAN (R 4.4.0)[39m +## R.utils 2.12.3 [90m2023-11-18[39m [90m[1][39m [90mCRAN (R 4.4.0)[39m +## R6 2.5.1 [90m2021-08-19[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## rappdirs 0.3.3 [90m2021-01-31[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## RBGL 1.79.0 [90m2023-10-24[39m [90m[1][39m [90mBioconductor[39m +## RColorBrewer 1.1-3 [90m2022-04-03[39m [90m[1][39m [90mCRAN (R 4.4.0)[39m +## Rcpp 1.0.12 [90m2024-01-09[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## RCurl 1.98-1.14 [90m2024-01-09[39m [90m[1][39m [90mCRAN (R 4.4.0)[39m +## remotes [1m[35m2.5.0.9000 [39m[22m [90m2024-04-01[39m [90m[1][39m [1m[35mGithub (r-lib/remotes@ac483e7)[39m[22m +## renv 1.0.5 [90m2024-02-29[39m [90m[1][39m [90mCRAN (R 4.5.0)[39m +## rlang 1.1.3 [90m2024-01-10[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## rmarkdown * 2.26 [90m2024-03-05[39m [90m[1][39m [90mCRAN (R 4.5.0)[39m +## rprojroot 2.0.4 [90m2023-11-05[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## RSQLite 2.3.6 [90m2024-03-31[39m [90m[1][39m [90mCRAN (R 4.5.0)[39m +## rstudioapi 0.16.0 [90m2024-03-24[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## RUnit 0.4.33 [90m2024-02-22[39m [90m[1][39m [90mCRAN (R 4.5.0)[39m +## rvcheck 0.2.1 [90m2021-10-22[39m [90m[1][39m [90mCRAN (R 4.4.0)[39m +## rworkflows 1.0.1 [90m2024-04-01[39m [90m[1][39m [1m[35mGithub (neurogenomics/rworkflows@9352118)[39m[22m +## scales 1.3.0 [90m2023-11-28[39m [90m[1][39m [90mCRAN (R 4.4.0)[39m +## sessioninfo 1.2.2 [90m2021-12-06[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## shiny 1.8.1 [90m2024-03-26[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## stringdist 0.9.12 [90m2023-11-28[39m [90m[1][39m [90mCRAN (R 4.4.0)[39m +## stringi 1.8.3 [90m2023-12-11[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## stringr 1.5.1 [90m2023-11-14[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## tibble 3.2.1 [90m2023-03-20[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## tidyselect 1.2.1 [90m2024-03-11[39m [90m[1][39m [90mCRAN (R 4.5.0)[39m +## urlchecker 1.0.1 [90m2021-11-30[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## usethis 2.2.3 [90m2024-02-19[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## utf8 1.2.4 [90m2023-10-22[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## vctrs 0.6.5 [90m2023-12-01[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## xfun 0.43 [90m2024-03-25[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## XML 3.99-0.16.1 [90m2024-01-22[39m [90m[1][39m [90mCRAN (R 4.4.0)[39m +## xtable 1.8-4 [90m2019-04-21[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## yaml 2.3.8 [90m2023-12-11[39m [90m[2][39m [90mCRAN (R 4.5.0)[39m +## yulab.utils 0.1.4 [90m2024-01-28[39m [90m[1][39m [90mCRAN (R 4.4.0)[39m +## +## [90m [1] /__w/_temp/Library[39m +## [90m [2] /usr/local/lib/R/site-library[39m +## [90m [3] /usr/local/lib/R/library[39m +## +## [1m[36m──────────────────────────────────────────────────────────────────────────────[39m[22m
diff --git a/pkgdown.yml b/pkgdown.yml index 05ab021..9a67ac1 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -5,5 +5,5 @@ articles: devoptera: devoptera.html docker: docker.html make_hex: make_hex.html -last_built: 2023-12-10T23:31Z +last_built: 2024-04-01T17:24Z diff --git a/reference/args2vars.html b/reference/args2vars.html index edcbd64..b2b989f 100644 --- a/reference/args2vars.html +++ b/reference/args2vars.html @@ -75,7 +75,7 @@

Set function argument defaults to global variables

fn = "current", remove = FALSE, envir = .GlobalEnv, - reassign = FALSE, + reassign = TRUE, run_source_all = TRUE, set_dots = NULL, parent_fn = sys.function(sys.parent()), @@ -173,8 +173,8 @@

Examples

#> { #> stop("No default") #> } -#> <bytecode: 0x55858d590a50> -#> <environment: 0x55858d689260> +#> <bytecode: 0x55953e56d620> +#> <environment: 0x55953e667dc0> #> #> $lib.loc #> NULL diff --git a/reference/devoptera-package.html b/reference/devoptera-package.html index 48c7504..b837096 100644 --- a/reference/devoptera-package.html +++ b/reference/devoptera-package.html @@ -78,9 +78,7 @@

See also

Author

Maintainer: Brian Schilder brian_schilder@alumni.brown.edu (ORCID)

-

Authors:

+