fix test_processed_variants

nebfield · nebfield · commit 396351fe19f1 · 2024-10-10T11:23:52.000+01:00
diff --git a/tests/subworkflows/test_apply_score.py b/tests/subworkflows/test_apply_score.py
@@ -42,7 +42,7 @@ def test_processed_variants(workflow_dir):
     """Make sure n_lines in scorefile == --score XXX variants processed in log"""
     # find directories with scoring file variants in them
     scoring_variants = [
-        pathlib.Path(x)
+        pathlib.Path(workflow_dir / x)
         for x in glob.glob("work/**/**/*.sscore.vars", root_dir=workflow_dir)
     ]
     not_symlinks = [not x.is_symlink() for x in scoring_variants]

Original file line number	Diff line number	Diff line change
`@@ -42,7 +42,7 @@ def test_processed_variants(workflow_dir):`
`42`	`42`	`"""Make sure n_lines in scorefile == --score XXX variants processed in log"""`
`43`	`43`	`# find directories with scoring file variants in them`
`44`	`44`	`scoring_variants = [`
`45`		`- pathlib.Path(x)`
	`45`	`+ pathlib.Path(workflow_dir / x)`
`46`	`46`	`for x in glob.glob("work///*.sscore.vars", root_dir=workflow_dir)`
`47`	`47`	`]`
`48`	`48`	`not_symlinks = [not x.is_symlink() for x in scoring_variants]`