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2 | 2 |
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3 | 3 | ## 0.1 series
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4 | 4 |
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| 5 | +### 0.1.27 |
| 6 | + |
| 7 | +Features: |
| 8 | +* Added method to check if measurement time is at steady-state by @dilpath in |
| 9 | + https://github.com/PEtab-dev/libpetab-python/pull/124 |
| 10 | +* Create dummy simulation conditions dataframe for empty measurements by |
| 11 | + @dilpath in https://github.com/PEtab-dev/libpetab-python/pull/127 |
| 12 | +* Validator: Report empty noiseFormula by @dweindl in |
| 13 | + https://github.com/PEtab-dev/libpetab-python/pull/134 |
| 14 | +* Speedup visspec assembly / fix deprecation warning by @dweindl in |
| 15 | + https://github.com/PEtab-dev/libpetab-python/pull/135 |
| 16 | +* Handle incomplete PEtab problems in `petab.Problem.from_yaml` by @dweindl in |
| 17 | + https://github.com/PEtab-dev/libpetab-python/pull/138 |
| 18 | +* Argument forwarding for |
| 19 | + `Problem.get_optimization_to_simulation_parameter_mapping` by @dweindl in |
| 20 | + https://github.com/PEtab-dev/libpetab-python/pull/159 |
| 21 | +* Added candidate schema for version 2 by @dweindl in |
| 22 | + https://github.com/PEtab-dev/libpetab-python/pull/142 |
| 23 | +* `get_parameter_df`: Allow any collection of parameter tables by @dweindl in |
| 24 | + https://github.com/PEtab-dev/libpetab-python/pull/153, |
| 25 | + @m-philipps in https://github.com/PEtab-dev/libpetab-python/pull/156, |
| 26 | + @dilpath in https://github.com/PEtab-dev/libpetab-python/pull/157 |
| 27 | +* Updated visualization example notebooks |
| 28 | + by @dweindl in https://github.com/PEtab-dev/libpetab-python/pull/137, |
| 29 | + by @plakrisenko in https://github.com/PEtab-dev/libpetab-python/pull/146, |
| 30 | + by @plakrisenko in https://github.com/PEtab-dev/libpetab-python/pull/147 |
| 31 | +* Added support for PEtab problems with multiple condition files |
| 32 | + by @dweindl in https://github.com/PEtab-dev/libpetab-python/pull/152 |
| 33 | +* Added abstraction for (SBML) models by @dweindl in |
| 34 | + https://github.com/PEtab-dev/libpetab-python/pull/133 |
| 35 | + |
| 36 | +Fixes: |
| 37 | +* Apply get table method before write table method to ensure correct index |
| 38 | + by @dilpath in https://github.com/PEtab-dev/libpetab-python/pull/126 |
| 39 | +* petablint: Fix incorrect noise-parameter-mismatch error message |
| 40 | + by @dweindl in https://github.com/PEtab-dev/libpetab-python/pull/129 |
| 41 | +* Fixed handling of NaN values for parameters in condition table |
| 42 | + by @dweindl in https://github.com/PEtab-dev/libpetab-python/pull/150 |
| 43 | +* More informative `petab.calculate` errors |
| 44 | + by @dweindl in https://github.com/PEtab-dev/libpetab-python/pull/151 |
| 45 | + |
| 46 | +Removals: |
| 47 | +* Removed ancient/deprecated default file naming scheme |
| 48 | + by @dweindl in https://github.com/PEtab-dev/libpetab-python/pull/132 |
| 49 | +* Removed ancient deprecated functions related to specifying observables/noise |
| 50 | + models inside SBML |
| 51 | + by @dweindl in https://github.com/PEtab-dev/libpetab-python/pull/140 |
| 52 | + https://github.com/PEtab-dev/libpetab-python/pull/131 |
| 53 | +* Removed deprecated visualization functions |
| 54 | + by @dweindl in https://github.com/PEtab-dev/libpetab-python/pull/130 |
| 55 | + |
| 56 | +**New Contributors** |
| 57 | +* @m-philipps made their first contribution in https://github.com/PEtab-dev/libpetab-python/pull/156 |
| 58 | + |
| 59 | +**Full Changelog**: https://github.com/PEtab-dev/libpetab-python/compare/v0.1.26...v0.1.27 |
| 60 | + |
5 | 61 | ### 0.1.26
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6 | 62 |
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7 | 63 | * Fix SBML Rule handling logic by @dweindl in
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