RCMD.yaml

on:
  push:
    branches: [ "master" ]
  pull_request:
    branches: [ "master" ]

name: R-CMD-check

jobs:
  R-CMD-check:
    runs-on: ${{ matrix.config.os }}

    name: ${{ matrix.config.os }} (${{ matrix.config.r }})

    strategy:
      fail-fast: false
      matrix:
        config:
          - {os: macOS-latest, r: 'release'}
          - {os: windows-latest, r: 'release'}
          - {os: ubuntu-20.04, r: 'release'}

    env:
      ACTIONS_ALLOW_UNSECURE_COMMANDS: true
      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
      RSPM: ${{ matrix.config.rspm }}
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

    steps:
      - uses: actions/checkout@v2

      # macOS-specific steps
      - name: Fix and Debug Homebrew Issues
        if: runner.os == 'macOS'
        run: |
          # Reset Homebrew changes
          cd /opt/homebrew/Library/Taps/homebrew/homebrew-core || exit 1
          git stash -u || echo "No changes to stash"
          git clean -d -f || echo "No files to clean"

          # Fix Homebrew permissions
          sudo chown -R $(whoami) $(brew --prefix)/*

          # Debug Homebrew
          brew doctor || echo "brew doctor failed"
          brew config || echo "brew config failed"

      - name: Install macOS Utilities
        if: runner.os == 'macOS'
        run: |
          brew update || echo "Homebrew update failed"
          brew install libomp || echo "libomp installation failed"
          brew install qpdf || echo "qpdf installation failed but continuing"
          export DYLD_LIBRARY_PATH=$(brew --prefix libomp)/lib
          echo "DYLD_LIBRARY_PATH=$(brew --prefix libomp)/lib" >> $GITHUB_ENV

      # Set up R environment
      - uses: r-lib/actions/setup-r@v2-branch
        with:
          r-version: ${{ matrix.config.r }}

      - uses: r-lib/actions/setup-pandoc@v2-branch

      # Install Miniconda (all OS)
      - uses: conda-incubator/setup-miniconda@v3
        with:
          auto-update-conda: true
          python-version: 3.9
          miniconda-version: "latest"

      - name: Install Conda Dependencies
        run: |
          conda config --add channels defaults
          conda config --set solver classic
          conda install -c conda-forge numpy

      - name: Query R Dependencies
        run: |
          install.packages('remotes')
          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
        shell: Rscript {0}

      # Cache R packages
      - name: Cache R Packages
        if: runner.os != 'Windows'
        uses: actions/cache@v1
        with:
          path: ${{ env.R_LIBS_USER }}
          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-

      # Install system dependencies (Linux only)
      - name: Install System Dependencies
        if: runner.os == 'Linux'
        run: |
          while read -r cmd; do
            eval sudo $cmd
          done < <(Rscript -e 'cat(remotes::system_requirements("ubuntu", "20.04"), sep = "\n")')
          sudo apt install libharfbuzz-dev libfribidi-dev

      # Install R dependencies
      - name: Install R Dependencies
        run: |
          remotes::install_deps(dependencies = TRUE)
          remotes::install_cran("rcmdcheck")
        shell: Rscript {0}

      # Fix Conda permissions (macOS only)
      - name: Fix Conda Permissions
        if: runner.os == 'macOS'
        run: sudo chown -R $UID $CONDA

      # Install and test "text" package
      - name: Install and Test "text" Package
        run: |
          install.packages("devtools")
          library(devtools)
          devtools::install_github("oscarkjell/text")
          text::textrpp_install(prompt = FALSE)
          text::textrpp_initialize(textEmbed_test = TRUE)
        shell: Rscript {0}

      # Session Info
      - name: Session Info
        run: |
          options(width = 100)
          pkgs <- installed.packages()[, "Package"]
          sessioninfo::session_info(pkgs, include_base = TRUE)
        shell: Rscript {0}

      # Run R CMD check
      - name: R CMD Check
        env:
          _R_CHECK_CRAN_INCOMING_: false
          OMP_MAX_ACTIVE_LEVELS: 0
        run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
        shell: Rscript {0}

      # Display testthat output
      - name: Display Testthat Output
        if: always()
        run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
        shell: bash