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fastv stats #13

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intikhab opened this issue Jan 17, 2021 · 0 comments
Open

fastv stats #13

intikhab opened this issue Jan 17, 2021 · 0 comments

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@intikhab
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Dear FastV developers,

Is there a way to estimate abundance of a genome with proportion of reads matched by fastv?

For an example genome mapped by fastv, if we are seeing 381 k-mer keys matched with 824 kmer hits, coverage 74.8%, showing a median depth of 1 and mean depth of 2.16, how can we deduce the abundance of such an example genome detected in a sample.

Can you please share your thoughts?

Thanks,
Intikhab

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