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IGH-BCL2 is not detected but bam is supported #42

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swxzh621 opened this issue Jun 26, 2023 · 1 comment
Open

IGH-BCL2 is not detected but bam is supported #42

swxzh621 opened this issue Jun 26, 2023 · 1 comment

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@swxzh621
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I have a sample with BCL2-IGH verified by FISH. There are lots of reads to support viewed by IGV. the pictuers is as follows. I am running with default parameters，and BCL2,IGH is included in csv file

BCL2_NM_000633,chr18:60790579-60987361
1,60986406,60986613
2,60985314,60986185
3,60790578,60795992

IGH,chr14:106052774-107288051

I would like to know whether or not relevant parameters need to be adjusted. Thanks a lot
@hushuzuiniu
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Hi,
I had the same query, may I ask if you have resolved it now? very grateful if you can advise.

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@hushuzuiniu @swxzh621