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Use OmicsDI as TODO list for repositories to add Bioschemas #23

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sneumann opened this issue Aug 30, 2019 · 3 comments
Open

Use OmicsDI as TODO list for repositories to add Bioschemas #23

sneumann opened this issue Aug 30, 2019 · 3 comments

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@sneumann
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sneumann commented Aug 30, 2019

Hi, I would love to see (and help!) to re-do the annotations and mappings
done via the OmicsDI data schema with bioschemas.org.
This includes

  1. Mapping OmicsDI data schema to concepts in (bio)schemas.org
  2. Creating missing ones in Bioschemas.org
  3. Working with repositories to converge towards bioschemas.org annotations

Another potential idea would be to accept new repos ONLY if they use bioschemas.org
in first place.
Are there any roadblocks to this plan ? Or "just" a lot of work ?
Yours, Steffen

@ypriverol
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Hi @sneumann We implemented schema.org long time ago. See examples:

https://search.google.com/structured-data/testing-tool#url=https%3A%2F%2Fwww.omicsdi.org%2Fdataset%2Farrayexpress-repository%2FE-MTAB-5006

If you see that more changes are needed just let us know.

@sneumann
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Good start ! I was more suggesting to convince the upstream repositories
to adopt bioschemas to make your life easier. Now that they see
what great things come out of a meta-search like OmicsDI.
they might see the value. And I'd like to see more information from
OmicsDI reflected in Bioschemas, e.g. the Organism, ...
and use the OmicsDI momentum to harmonise across repos.
Yours, Steffen
P.S.: of course my favourite study is:
https://search.google.com/structured-data/testing-tool/u/0/#url=https%3A%2F%2Fwww.omicsdi.org%2Fdataset%2Fmetabolights_dataset%2FMTBLS2

@ypriverol
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I will add an issue about how to push the Organism into BioSchemas.

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