Use Cases we should fill

[ypriverol]

Search for data types x and y related to the same biological process:

• Search for data of all types related to the SHH gene in human embryogenesis across all databases.

• Search for data on hES cells from IVF embryos related to human embryogenesis across all databases.

• Find data on cellular differentiation in mesenchymal stem cells related to human embryogenesis across all databases.

• Find data of all types related to TGF-β signaling pathway across all databases.

• Search for data of all types published within the last ten years related to the TGF-β signaling pathway.

• Search for data of all types on cheA gene related to bacterial chemotaxis across all databases.

• Search for data of all types related to Helicobacter pylori in the stomach and chemotaxis across all databases.

• Search for data of all types on signal transduction related to bacterial chemotaxis across all databases.

• Find protein sequencing data related to bacterial chemotaxis across all databases.

• Search for data of all types related to bacterial chemotaxis with mentions of datasets in literature

• Search for data of all types for GLUT1 gene related to glycolysis across all databases

• Search for data of all types related to CRC tissue in humans related to glycolysis across all databases

• Find data of all types on synaptic growth and remodeling related to glycolysis in the human brain across all databases.

• Search for gene mutation datasets related to glycolysis across all databases

• Search for data of all types related to glycolysis in the human brain with more than 10 citations across all databases

• Search for data of all types related to MIP-2 gene related to biliary atresia across all databases

• Search for data of all types related to bile secretions in SR-BI KO mice across all data bases

-[ ] Find all related data on cholesterol storage in mice with biliary atresia across all data bases

• Search for gene expression data related to bile acid secretions in patients with biliary atresia across all databases

• Search for all data types related to bile acid secretions in mice with biliary atresia that that require NPG site licensing

• Search for all data types related to gene TP53INP1 in relation to p53 activation across all databases

• Search for all data types related to mouse embryonic fibroblasts related to p53 activation during oxidative stress across all databases

• Find all data types related to inflammation during oxidative stress in human hepatic cells across all databases

• Search for protein sequencing data related to p53 activation in human hepatic cells across all databases

• Search for all data types related to p53 activation during oxidative stress across all databases published within the past 15 years that require a Data Use Certificate (DUC)

• Search for data of all types for memory augmentation studies across all databases

• Search for gene expression data regarding memory augmentation studies across all databases
  Search for gene expression and genetic deletion data regarding memory augmentation across all databases
  Search for gene expression and genetic deletion data that mention CD69 in memory augmentation studies across all databases
  Search for gene expression data mentioning CD69, and memory augmentation in a tab-delimited format across all databases
  Search for data of all types for pigmentation across all databases
  Search for genomic sequence data regarding pigmentation across all databases
  Search for gene expression and genomic sequence data regarding pigmentation across all databases
  Search for gene expression and genomic sequence data that mention MC1R in pigmentation studies across all databases
  Search for gene expression data for MC1R, and pigmentation in a tab-delimited format across all databases
  Search for data of all types for aging across all databases
  Search for protein aggregation data regarding aging across all databases
  Search for protein aggregation and gene expression data regarding aging across all databases
  Search for protein aggregation and gene expression data that mention trace elements in aging studies across all databases
  Search for gene expression data for trace elements and aging in a plain text format across all databases
  Search for data of all types for cellular differentiation across all databases
  Search for gene expression data regarding cellular differentiation across all databases
  Search for gene expression data that mention E2F cell line in cellular differentiation across all databases
  Search for a gene expression data that mention E2F cell line and Ras activation in cellular differentiation studies across all databases
  Search for gene expression data for E2F cell line, Ras activation, and cellular differentiation in XML format across all databases
  Search for data of all types for cellular respiration across all databases
  Search for genetic sequence data regarding cellular respiration across all databases
  Search for genetic sequence data and proteomics data regarding cellular respiration across all databases
  Search for genetic sequence data and proteomics data that mention 5hmC in a cellular respiration studies across all databases
  Search for data of all types for a genetic sequence, proteomics, 5hmC, and cellular respiration in a RAW format across all databases
  WPUC3 - Search for data types x (genome data) with biological process (mutations) y and z in species/organism a for phenotype b
  Search for data on BRCA gene mutations and the estrogen signaling pathway in women with stage I breast cancer
  Search for data of all types for PTEN gene related to women with stage I breast cancer
  Search for genomic data of all types in epithelial cells in women across all databases
  Find data of all types on the regulation of DNA repair related to the estrogen signaling pathway in breast cancer patients across all databases
  Find all gene expression data related to the estrogen signaling pathway across all databases
  Search for data of all types related to the estrogen signaling pathway in women with stage II breast cancer published within the last 10 years
  Search for gene expression data on fatty acid oxidation and adaptive immune responses in men over 50 with cardiovascular disease
  Search for data of all types related to the LDLR gene related to cardiovascular disease across all databases
  Search for data of all types on adipocytes in men over 50 with cardiovascular disease across all databases
  Search for data of all types related to calcium signaling and cardiomyopathy in patients with CD across all databases
  Search for protein sequencing data related to cardiovascular disease in men over 50 across all databases
  Find data of all types related to cardiovascular disease in men over fifty across all databases with more than 10 citations
  Search for gene expression datasets on photo transduction and regulation of calcium in blind D. melanogaster
  Find data of all types related to the org-1 gene related to D. melanogaster across all databases
  Search for data of all types on pigment cells of ommatidia related to blindness in D. melanogaster across all databases
  Search for data of all types related to circadian sleep/wake cycles in vision impaired/ blind D. melanogaster across all databases
  Search for proteomic data related to regulation of calcium in blind D. melanogaster across all databases
  Find data of all types on blindness in D. melanogaster across all databases redistributed for free under Open Database License (ODC-ODbL)
  Search for protein sequencing datasets on circadian rhythms and insulin secretion in obese M. musculus
  Search for data of all types related to the ob gene in obese M. musculus across all databases
  Find data of all types on adipose tissue related to obese M. musculus across all databases
  Search for data of all types related to energy metabolism in obese M. musculus across all databases
  Search for gene expression datasets related to insulin secretion in obese M. musculus across all databases
  Search for all types of data related to obese M. musculus across all databases that require no access requirements
  Search for proteomic data on iron metabolism and hypoxia signaling in iron deficient C. elegans
  Search for data of all types related to Tfrc gene in in iron deficient C. elegans across all databases
  Search for data of all types related to extraintestinal tissues in C. elegans deficient in iron across all databases
  Search for data of all types on aging in iron deficient C. elegans across all databases
  Search for gene expression data on hypoxia signaling in iron deficient C. elegans across all databases
  Find data of all types related to iron metabolism in iron deficient C. elegans that have been published within the last five years across all databases
  Search for data of all types for different eye colors across all databases
  Search for data of all types that mention different eye colors in human across all databases
  Search for data of all types that mention replication and different eye colors in human across all databases
  Search for mutation data mentioning replication and different eye colors in human across all databases
  Search for mutation data that mention replication, HERC2, and different eye colors in human across all databases
  Search for genome data that mention replication, mutation, HERC2, and different eye colors in human in a txt format across all databases
  Search for data of all types for a human cell line across all databases
  Search for data of all types for cell differentiation in human cell line across all databases
  Search for mutation data for cell differentiation and in human cancer cell line across all databases
  Search for gene expression and mutation data for cell differentiation in human cancer cell across all databases
  Search for gene expression data for a cell differentiation and mutation in human cancer cell in a tab-limited format across all databases
  Search for data of all types for baldness in females across all databases
  Search for data of all types that mention differentiation in female baldness across all databases
  Search for transcriptional data mentioning differentiation in female baldness across all databases
  Search for transcriptional data that mention differentiation, EDA2R gene in female baldness across all databases
  Search for genomic and transcriptional data mentioning differentiation, EDA2R gene in female baldness across all databases
  Search for genomic and transcriptional data mentioning differentiation, EDA2R gene in female baldness in xml format across all databases
  Search for data of all types for anxiety-like phenotype in human male across all databases.
  Search for mutation data from an anxiety-like phenotype in human male across all databases.
  Search for mutation and genetic variation data in an anxiety-like phenotype in human male across all databases.
  Search for genetic data in an anxiety-like phenotype in human male across all databases.
  Search for genetic data in an anxiety-like phenotype in human male across all databases in a FASTQ format.
  Search for data of all types for developmental phenotype in a fungal species across all databases.
  Search for sequencing data for a developmental phenotype in a fungal species across all databases.
  Search for sequencing data that mention transformation in a developmental phenotype in a fungal species across all databases.
  Search for proteomic and sequencing data that mention transformation in a developmental phenotype in a fungal species across all databases.
  Search for proteomic and sequencing data that mention transformation in a developmental phenotype in a fungal species across all databases in txt format.

##BGUC1-1 - Search for disease x data of all types across all databases

Search for data of all types on multiple sclerosis of all types across all databases
Search for data of all types for HLA-DRB1 gene in multiple sclerosis across all databases
Search for data on oligodendrocytes in female human nervous tissue related to multiple sclerosis across all databases
Find data on T-cell homeostasis related to multiple sclerosis across all databases
Find gene expression datasets on multiple sclerosis across all databases
Search for all data types on multiple sclerosis published within the last 15 years.
Search for data of all types on Huntington’s disease across all databases
Search for all data for the HTT gene related to Huntington’s disease across all databases
Search for data on neural brain tissue in transgenic mice related to Huntington’s disease across all databases
Search for data on transcriptional regulation related to Huntington’s disease across all databases
Find protein sequencing data on Huntington’s disease across all databases
Search for all types of data on Huntington’s Disease across all databases that require NPG site licensing
Search for data of all types on Parkinson's disease across all databases
Search for all data on the SNCA gene related to Parkinson’s disease across all databases
Search for data on nerve cells in the substantia nigra in mice across all databases
Search for data on long-term potentiation related to Parkinson’s disease across all databases
Search for proteomic data on Parkinson’s Disease across all databases
Search for all data types related to Parkinson’s Disease patients over 40 years of age across all databases
Search for data of all types on Myasthenia Gravis across all databases
Search for data on the TNIP1 gene related to MG across all databases
Search for data on extraocular muscle cells in humans related to MG across all databases
Find data on the NF-κB signaling pathway in MG patients across all databases
Search for gene expression datasets related to MG across all databases
Search for all data types on MG that have been published within the last 5 years across all databases
Search for data of all types on Friedreich's ataxia across all databases
Search for data on FXN gene in relation to Friedreich’s ataxia across all databases
Search for data on heart cells related to Friedreich’s ataxia across all databases
Find data on mitochondrial respiration related to Friedreich's ataxia across all databases
Search for protein sequencing data related to Friedreich’s ataxia across all databases
Search for all data types on Friedreich’s ataxia that can be accessed free under the Open Data Commons licenses across all databases
Search for data of all types for gestational diabetes across all databases
Search for data of all types mentioning GLS2 gene in gestational diabetes across all databases
Search for data of all types mentioning GLS2 gene and placental tissue in gestational diabetes across all databases
Search for gene expression data mentioning GLS2 gene, placental tissue in gestational diabetes across all databases
Search for gene expression data mentioning GLS2 gene, placental tissue, in gestational diabetes in chip format across all databases
Search for data of all types for osteosarcoma across all databases.
Search for data of all types that mention ALP gene in an osteosarcoma across all databases.
Search for data of all types that mention ALP gene and Saos-2 cells for an osteosarcoma across all databases.
Search for data of all types that mention ALP gene, Saos-2 cells, and cell differentiation for an osteosarcoma across all databases.
Search for data of all types for an ALP gene, Saos-2 cells, and cell differentiation for an osteosarcoma in a txt format across all databases.
Search all proteomic data available for arthritis across all databases.
Search for data of all types for rheumatoid arthritis across all databases.
Search for data of all types that mention HLA-DRB1 gene in rheumatoid arthritis across all databases.
Search for data of all types for that mention HLA-DRB1 gene and lymphoblastoid cells for rheumatoid arthritis across all databases.
Search for sequence polymorphism data that mention HLA-DRB1 gene, lymphoblastoid cells for rheumatoid arthritis across all databases.
Search for sequence polymorphism data that mention HLA-DRB1 gene, lymphoblastoid cells for rheumatoid arthritis in FASTA format across all databases.
Search for data of all types for Down’s syndrome across all databases.
Search for data of all types using DSCAM gene in Down’s syndrome across all databases.
Search for data of all types for DSCAM and BAC genes in Down’s syndrome across all databases.
Search for data of all types that mention DSCAM and BAC genes and cell differentiation in Down’s syndrome across all databases.
Search for data of all types that mention DSCAM and BAC genes and cell differentiation in Down’s syndrome with associated literature across all databases.
Search for data of all types for giardiasis across all databases.