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Merge pull request #295 from OBOFoundry/patch-language-tags
Patch language tags
2 parents c96ab83 + 29440b8 commit 6b2c1e8

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‎cob-base.owl

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xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
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xmlns:terms="http://purl.org/dc/terms/">
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<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/cob/cob-base.owl">
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<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/cob/releases/2025-01-23/cob-base.owl"/>
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<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/cob/releases/2025-02-18/cob-base.owl"/>
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<dc:type rdf:resource="http://purl.obolibrary.org/obo/IAO_8000001"/>
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<terms:description xml:lang="en">COB brings together key terms from a wide range of OBO projects to improve interoperability.</terms:description>
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<terms:license rdf:resource="https://creativecommons.org/publicdomain/zero/1.0/"/>
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<terms:title xml:lang="en">Core Ontology for Biology and Biomedicine</terms:title>
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<owl:versionInfo>2025-01-23</owl:versionInfo>
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<owl:versionInfo>2025-02-18</owl:versionInfo>
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</owl:Ontology>
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@@ -33,25 +33,19 @@
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<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
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<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115">
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<rdfs:label>definition</rdfs:label>
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</owl:AnnotationProperty>
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<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
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<!-- http://purl.obolibrary.org/obo/IAO_0000116 -->
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<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000116">
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<rdfs:label>editor note</rdfs:label>
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</owl:AnnotationProperty>
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<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000116"/>
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<!-- http://purl.obolibrary.org/obo/IAO_0100001 -->
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<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0100001">
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<rdfs:label>term replaced by</rdfs:label>
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</owl:AnnotationProperty>
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<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0100001"/>
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@@ -105,31 +99,31 @@
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<!-- http://purl.obolibrary.org/obo/COB_0000016 -->
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<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/COB_0000016">
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<rdfs:label>executed by</rdfs:label>
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<rdfs:label xml:lang="en">executed by</rdfs:label>
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</owl:ObjectProperty>
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<!-- http://purl.obolibrary.org/obo/COB_0000081 -->
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<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/COB_0000081">
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<rdfs:label>intended to realize</rdfs:label>
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<rdfs:label xml:lang="en">intended to realize</rdfs:label>
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</owl:ObjectProperty>
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<!-- http://purl.obolibrary.org/obo/COB_0000084 -->
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<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/COB_0000084">
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<rdfs:label>has plan</rdfs:label>
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<rdfs:label xml:lang="en">has plan</rdfs:label>
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</owl:ObjectProperty>
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<!-- http://purl.obolibrary.org/obo/COB_0000085 -->
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<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/COB_0000085">
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<rdfs:label>intended plan process type</rdfs:label>
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<rdfs:label xml:lang="en">intended plan process type</rdfs:label>
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</owl:ObjectProperty>
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@@ -178,7 +172,7 @@
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<!-- http://purl.obolibrary.org/obo/COB_0000511 -->
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<owl:DatatypeProperty rdf:about="http://purl.obolibrary.org/obo/COB_0000511">
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<rdfs:label>has quantity</rdfs:label>
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<rdfs:label xml:lang="en">has quantity</rdfs:label>
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</owl:DatatypeProperty>
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<owl:DatatypeProperty rdf:about="http://purl.obolibrary.org/obo/COB_0000800">
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<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/COB_0000011"/>
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<obo:IAO_0000115>Number of protons in an atomic nucleus</obo:IAO_0000115>
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<rdfs:label>has atomic number</rdfs:label>
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<obo:IAO_0000115 xml:lang="en">Number of protons in an atomic nucleus</obo:IAO_0000115>
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<rdfs:label xml:lang="en">has atomic number</rdfs:label>
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</owl:DatatypeProperty>
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<owl:DatatypeProperty rdf:about="http://purl.obolibrary.org/obo/COB_0000801">
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<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
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<rdfs:label>has number of atomic nuclei</rdfs:label>
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<rdfs:label xml:lang="en">has number of atomic nuclei</rdfs:label>
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</owl:DatatypeProperty>
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<!-- http://purl.obolibrary.org/obo/COB_0000803 -->
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<owl:DatatypeProperty rdf:about="http://purl.obolibrary.org/obo/COB_0000803">
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<rdfs:label>has inchi string</rdfs:label>
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<rdfs:label xml:lang="en">has inchi string</rdfs:label>
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</owl:DatatypeProperty>
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@@ -267,9 +261,9 @@
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</owl:Restriction>
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</rdfs:subClassOf>
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<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/COB_0000013"/>
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<obo:IAO_0000115>A material entity consisting of exactly one atomic nucleus and the electron(s) orbiting it.</obo:IAO_0000115>
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<obo:IAO_0000116>This atom is closely related to ChEBI&apos;s atom, but not exactly equivalent to.</obo:IAO_0000116>
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<rdfs:label>atom</rdfs:label>
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<obo:IAO_0000115 xml:lang="en">A material entity consisting of exactly one atomic nucleus and the electron(s) orbiting it.</obo:IAO_0000115>
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<obo:IAO_0000116 xml:lang="en">This atom is closely related to ChEBI&apos;s atom, but not exactly equivalent to.</obo:IAO_0000116>
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<rdfs:label xml:lang="en">atom</rdfs:label>
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</owl:Class>
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<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000011"/>
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</owl:Restriction>
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</rdfs:subClassOf>
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<obo:IAO_0000115>A material entity that consists of two or more atoms that are all connected via covalent bonds such that any atom can be transitively connected with any other atom.</obo:IAO_0000115>
288-
<obo:IAO_0000116>This molecular entity is different than ChEBI&apos;s &apos;molecular entity&apos;.</obo:IAO_0000116>
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<obo:IAO_0000116>We would like to have cardinality restrictions on the logic, but there are some technical limitations.</obo:IAO_0000116>
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<rdfs:label>molecule</rdfs:label>
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<obo:IAO_0000115 xml:lang="en">A material entity that consists of two or more atoms that are all connected via covalent bonds such that any atom can be transitively connected with any other atom.</obo:IAO_0000115>
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<obo:IAO_0000116 xml:lang="en">This molecular entity is different than ChEBI&apos;s &apos;molecular entity&apos;.</obo:IAO_0000116>
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<obo:IAO_0000116 xml:lang="en">We would like to have cardinality restrictions on the logic, but there are some technical limitations.</obo:IAO_0000116>
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<rdfs:label xml:lang="en">molecule</rdfs:label>
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</owl:Class>
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<!-- http://purl.obolibrary.org/obo/COB_0000021 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/COB_0000021">
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<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
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<obo:IAO_0000115 xml:lang="en">A part of a multicellular organism that is a collection of cell components that are not all contained in one cell.</obo:IAO_0000115>
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<rdfs:label xml:lang="en">gross anatomical part</rdfs:label>
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</owl:Class>
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<!-- http://purl.obolibrary.org/obo/COB_0000022 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/COB_0000022">
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<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
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<obo:IAO_0000115>A material entity that is a maximal functionally integrated unit that develops from a program encoded in a genome</obo:IAO_0000115>
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<obo:IAO_0000116>&apos;Maximal functionally integrated unit&apos; is intended to express unity, which Barry considers synonymous with BFO &apos;object&apos;.</obo:IAO_0000116>
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<obo:IAO_0000116>Includes virus - we will later have a class for cellular organisms.</obo:IAO_0000116>
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<rdfs:label>organism</rdfs:label>
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<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000465"/>
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<obo:IAO_0000115 xml:lang="en">A material entity that is a maximal functionally integrated unit that develops from a program encoded in a genome</obo:IAO_0000115>
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<obo:IAO_0000116 xml:lang="en">&apos;Maximal functionally integrated unit&apos; is intended to express unity, which Barry considers synonymous with BFO &apos;object&apos;.</obo:IAO_0000116>
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<obo:IAO_0000116 xml:lang="en">Includes virus - we will later have a class for cellular organisms.</obo:IAO_0000116>
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<rdfs:label xml:lang="en">organism</rdfs:label>
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</owl:Class>
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<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000110"/>
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</owl:Restriction>
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</rdfs:subClassOf>
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<obo:IAO_0000115>A material entity processed by human activity with an intent to produce it.</obo:IAO_0000115>
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<obo:IAO_0000116>In the COB 2024 workshop there was much disagreement about this label.</obo:IAO_0000116>
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<rdfs:label>processed material entity</rdfs:label>
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<obo:IAO_0000115 xml:lang="en">A material entity processed by human activity with an intent to produce it.</obo:IAO_0000115>
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<obo:IAO_0000116 xml:lang="en">In the COB 2024 workshop there was much disagreement about this label.</obo:IAO_0000116>
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<rdfs:label xml:lang="en">processed material entity</rdfs:label>
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</owl:Class>
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</owl:Restriction>
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</rdfs:subClassOf>
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<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/COB_0000083"/>
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<rdfs:label>completely executed planned process</rdfs:label>
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<rdfs:label xml:lang="en">completely executed planned process</rdfs:label>
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</owl:Class>
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/COB_0000049">
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<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/COB_0000013"/>
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<obo:IAO_0000115>A molecule that consists of nucleotides (unmodified nucleotide residues and/or modified nucleotide residues) linked by phosphodiester bonds or derivatives of such bonds.</obo:IAO_0000115>
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<rdfs:label>nucleic acid chain</rdfs:label>
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<obo:IAO_0000115 xml:lang="en">A molecule that consists of nucleotides (unmodified nucleotide residues and/or modified nucleotide residues) linked by phosphodiester bonds or derivatives of such bonds.</obo:IAO_0000115>
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<rdfs:label xml:lang="en">nucleic acid chain</rdfs:label>
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</owl:Class>
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<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000013"/>
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</owl:Restriction>
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</rdfs:subClassOf>
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<obo:IAO_0000115>A complex of two or more molecular entities that are not covalently bound.</obo:IAO_0000115>
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<rdfs:label>complex of molecules</rdfs:label>
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<obo:IAO_0000115 xml:lang="en">A complex of two or more molecular entities that are not covalently bound.</obo:IAO_0000115>
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<rdfs:label xml:lang="en">complex of molecules</rdfs:label>
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</owl:Class>
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/COB_0000082">
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<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
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<obo:IAO_0000115>A process that is initiated by an agent who intends to carry out a plan to achieve an objective through one or more actions as described in a plan specification.</obo:IAO_0000115>
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<rdfs:label>planned process</rdfs:label>
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<obo:IAO_0000115 xml:lang="en">A process that is initiated by an agent who intends to carry out a plan to achieve an objective through one or more actions as described in a plan specification.</obo:IAO_0000115>
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<rdfs:label xml:lang="en">planned process</rdfs:label>
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</owl:Class>
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/COB_0000083">
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<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/COB_0000082"/>
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<rdfs:label>failed planned process</rdfs:label>
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<rdfs:label xml:lang="en">failed planned process</rdfs:label>
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</owl:Class>
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</owl:intersectionOf>
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</owl:Class>
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</rdfs:subClassOf>
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<obo:IAO_0000115>A planned process that intends to output material entities from input material entities</obo:IAO_0000115>
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<rdfs:label>material processing</rdfs:label>
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<obo:IAO_0000115 xml:lang="en">A planned process that intends to output material entities from input material entities</obo:IAO_0000115>
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<rdfs:label xml:lang="en">material processing</rdfs:label>
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</owl:Class>
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<!-- http://purl.obolibrary.org/obo/COB_0000502 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/COB_0000502">
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<rdfs:label>characteristic</rdfs:label>
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<rdfs:label xml:lang="en">characteristic</rdfs:label>
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</owl:Class>
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<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000022"/>
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</owl:Restriction>
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</rdfs:subClassOf>
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<obo:IAO_0000115>A process during which an organism comes into contact with another entity.</obo:IAO_0000115>
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<rdfs:label>exposure of organism</rdfs:label>
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<obo:IAO_0000115 xml:lang="en">A process during which an organism comes into contact with another entity.</obo:IAO_0000115>
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<rdfs:label xml:lang="en">exposure of organism</rdfs:label>
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</owl:Class>
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<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
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</owl:Restriction>
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</rdfs:subClassOf>
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<obo:IAO_0000115>A processed material entity which is designed to be capable of a process.</obo:IAO_0000115>
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<rdfs:label>device</rdfs:label>
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<obo:IAO_0000115 xml:lang="en">A processed material entity which is designed to be capable of a process.</obo:IAO_0000115>
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<rdfs:label xml:lang="en">device</rdfs:label>
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</owl:Class>
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<!-- http://purl.obolibrary.org/obo/OBI_0000260 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000260"/>
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<!-- http://purl.obolibrary.org/obo/UBERON_0000465 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000465"/>
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</rdf:RDF>
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