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cudamapper error using bam output #656
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I get the same warnings/errors and result when using SAM output (-S). |
Running without |
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Hi folks,
I'm trying cudamapper with this command:
/opt/GenomeWorks-2021.02.2/bin/cudamapper PAG33026_pass_concat.fastq.gz ../hg19a.fa -B > cudamapper_2021_02_02_GM24385.bam
which outputs quite a lot of output to stdout/stderr, from which I have reported the unique lines below:
In practise I think I get the "Duplicate entry "N" " error for each read that is processed.
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