Ngen won't run using netcdf input forcing file without precip_rate variable #773
Description
Current behavior
The ending part of the output:
'''
Building Catchment collection
terminate called after throwing an instance of 'realization::ConfigurationException'
what(): Multi BMI formulation cannot be created from config: cannot find available data provider to satisfy set of deferred provisions for nested module at index 2: {atmosphere_water__liquid_equivalent_precipitation_rate}
terminate called after throwing an instance of 'realization::ConfigurationException'
what(): Multi BMI formulation cannot be created from config: cannot find available data provider to satisfy set of deferred provisions for nested module at index 2: {atmosphere_water__liquid_equivalent_precipitation_rate}
===================================================================================
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= PID 47468 RUNNING AT nwcal-ucs3.nwc.nws.noaa.gov
= EXIT CODE: 134
= CLEANING UP REMAINING PROCESSES
= YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
===================================================================================
YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Aborted (signal 6)
This typically refers to a problem with your application.
Please see the FAQ page for debugging suggestions
Expected behavior
Output (note that the HDF5-DIAG is due to another unrelated NetCDF file close issue which we are working on to resolve):
...
Finished 240 timesteps.
NGen top-level timings:
NGen::init: 3053.97
NGen::simulation: 1304.83
NGen::routing: 1.0719e-05
HDF5-DIAG: Error detected in HDF5 (1.10.1) thread 0:
#000: H5D.c line 332 in H5Dclose(): not a dataset
major: Invalid arguments to routine
minor: Inappropriate type
NetCDF: HDF error
file: ncFile.cpp line:33
Steps to replicate behavior (include URLs)
On UCS servers, after building the MPI version of the ngen executable, run the MPI job with the following command line:
nohup mpirun -n 32 ./cmake_build_mpi/ngen conus.gpkg '' conus.gpkg '' data/bmi_multi_realization_config_w_sloth_pet_noah_netcdf_conus.json conus_partition_32.json &
where data/bmi_multi_realization_config_w_sloth_pet_noah_netcdf_conus.json is displayed below:
{
"global": {
"formulations": [
{
"name": "bmi_multi",
"params": {
"model_type_name": "bmi_multi_noahowp_cfe",
"forcing_file": "",
"init_config": "",
"allow_exceed_end_time": true,
"main_output_variable": "QINSUR",
"modules": [
{
"name": "bmi_c++",
"params": {
"model_type_name": "bmi_c++_sloth",
"library_file": "./extern/sloth/cmake_build/libslothmodel",
"init_config": "/dev/null",
"allow_exceed_end_time": true,
"main_output_variable": "z",
"uses_forcing_file": false,
"model_params": {
"sloth_ice_fraction_schaake(1,double,m,node)": 0.0,
"sloth_ice_fraction_xinanjiang(1,double,1,node)": 0.0,
"sloth_smp(1,double,1,node)": 0.0
}
}
},
{
"name": "bmi_c",
"params": {
"model_type_name": "bmi_c_pet",
"library_file": "./extern/evapotranspiration/evapotranspiration/cmake_build/libpetbmi",
"forcing_file": "",
"init_config": "./conus_config/PET_{{id}}.ini",
"allow_exceed_end_time": true,
"main_output_variable": "water_potential_evaporation_flux",
"registration_function": "register_bmi_pet",
"variables_names_map": {
"water_potential_evaporation_flux": "potential_evapotranspiration"
},
"uses_forcing_file": false
}
},
{
"name": "bmi_fortran",
"params": {
"model_type_name": "bmi_fortran_noahowp",
"library_file": "./extern/noah-owp-modular/cmake_build/libsurfacebmi",
"forcing_file": "",
"init_config": "./conus_config/NoahOWP_{{id}}.namelist",
"allow_exceed_end_time": true,
"main_output_variable": "QINSUR",
"variables_names_map": {
"PRCPNONC": "atmosphere_water__liquid_equivalent_precipitation_rate",
"Q2": "atmosphere_air_water~vapor__relative_saturation",
"SFCTMP": "land_surface_air__temperature",
"UU": "land_surface_wind__x_component_of_velocity",
"VV": "land_surface_wind__y_component_of_velocity",
"LWDN": "land_surface_radiation~incoming~longwave__energy_flux",
"SOLDN": "land_surface_radiation~incoming~shortwave__energy_flux",
"SFCPRS": "land_surface_air__pressure"
},
"uses_forcing_file": false
}
}
],
"uses_forcing_file": false
}
}
],
"forcing": {
"path": "./NextGen_forcing_2016010100.nc",
"provider": "NetCDF"
}
},
"time": {
"start_time": "2016-01-01 00:00:00",
"end_time": "2016-01-10 23:00:00",
"output_interval": 3600
}
}