From 31efe6f247e2766d151b5bf5e3047a5ffbf3eb2e Mon Sep 17 00:00:00 2001
From: MattLuck-NOAA <matt.luck@noaa.gov>
Date: Tue, 17 Sep 2024 10:33:36 -0600
Subject: [PATCH] Stop whitebox from downloading during runtime

---
 Dockerfile                         |   32 +-
 Pipfile                            |    2 +-
 Pipfile.lock                       | 1521 ++++++++++++++++++----------
 fim_pre_processing.sh              |    2 +-
 src/agreedem.py                    |    1 +
 src/unique_pixel_and_allocation.py |    1 +
 6 files changed, 1002 insertions(+), 557 deletions(-)

diff --git a/Dockerfile b/Dockerfile
index a15575710..249532846 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -10,7 +10,7 @@ ENV taudemDir=$depDir/taudem/bin
 ENV taudemDir2=$depDir/taudem_accelerated_flowDirections/taudem/build/bin
 
 # remove reference to missing repo
-RUN rm /etc/apt/sources.list.d/apache-arrow.sources
+# RUN rm /etc/apt/sources.list.d/apache-arrow.sources
 
 RUN apt-get update && apt-get install -y git  && rm -rf /var/lib/apt/lists/*
 
@@ -70,20 +70,12 @@ RUN mkdir -p $depDir
 COPY --from=builder $depDir $depDir
 
 # remove reference to missing repo
-RUN rm /etc/apt/sources.list.d/apache-arrow.sources
-
-RUN apt-get update --fix-missing && apt-get install -y openjdk-21-jdk && rm -rf /var/lib/apt/lists/*
-RUN apt update --fix-missing
-
-# An older version of openjdk still exists on the file system but was never cleaned up
-# After research, we realized, it just needs file cleanup. Leaving it there is triggering security warnings
-# RUN apt-get remove -y openjdk-17-jdk  (not installed, just residue left)
-RUN rm -rf ./usr/lib/jvm/*java-1.17* && \
-    rm -rf ./usr/lib/jvm/.java-1.17* && \
-    rm -rdf ./usr/lib/jvm/java-17*
+# RUN rm /etc/apt/sources.list.d/apache-arrow.sources
 
+# RUN apt-get update --fix-missing && apt-get install -y openjdk-19-jdk && rm -rf /var/lib/apt/lists/*
 
-RUN DEBIAN_FRONTEND=noninteractive TZ=Etc/UTC apt install -y p7zip-full python3-pip time mpich parallel libgeos-dev expect tmux rsync tzdata
+RUN apt update --fix-missing
+RUN DEBIAN_FRONTEND=noninteractive TZ=Etc/UTC apt install -y p7zip-full python3-pip time mpich parallel libgeos-dev expect tmux rsync tzdata wget
 
 RUN apt auto-remove
 
@@ -99,9 +91,7 @@ ENV PYTHONUNBUFFERED=TRUE
 
 ## ADD TO PATHS ##
 ENV PATH="$projectDir:${PATH}"
-#ENV PATH=${PATH}:$projectDir:$projectDir/$srcDir:$projectDir/tools
-# Jul 17, 2024: Even though PYTHONPATH isn't used, it still seems to want it.
-ENV PYTHONPATH=${PATH}:$srcDir:$projectDir/tools
+ENV PYTHONPATH=${PYTHONPATH}:$srcDir:$projectDir/unit_tests:$projectDir/tools
 
 ## install python 3 modules ##
 
@@ -120,12 +110,10 @@ RUN pip3 install pipenv==2024.0.1 && PIP_NO_CACHE_DIR=off pipenv install --syste
 # We download and unzip it to the same file folder that pip deployed the whitebox library.
 # Whitebox also attempts to always download a folder called testdata regardless of use.
 # We added an empty folder to fake out whitebox_tools.py so it doesn't try to download the folder
-
-# RUN wbox_path=/usr/local/lib/python3.10/dist-packages/whitebox/WBT && \
-#     wget -P $wbox_path https://www.whiteboxgeo.com/WBT_Linux/WhiteboxTools_linux_musl.zip && \
-#     unzip -o $wbox_path/WhiteboxTools_linux_musl.zip -d $wbox_path && \
-#     cp $wbox_path/whitebox_tools $wbox_path && \
-#     mkdir $wbox_path/testdata
+ENV WBT_PATH=/usr/local/lib/python3.10/dist-packages/whitebox/WBT
+RUN wget -P $WBT_PATH https://www.whiteboxgeo.com/WBT_Linux/WhiteboxTools_linux_musl.zip && \
+    unzip -o $WBT_PATH/WhiteboxTools_linux_musl.zip -d $WBT_PATH && \
+    cp $WBT_PATH/WhiteboxTools_linux_amd64/WBT/whitebox_tools $WBT_PATH
 # ----------------------------------
 
 ## RUN UMASK TO CHANGE DEFAULT PERMISSIONS ##
diff --git a/Pipfile b/Pipfile
index dd0495222..012b905e0 100644
--- a/Pipfile
+++ b/Pipfile
@@ -50,7 +50,7 @@ seaborn = "==0.12.2"
 tables = "==3.8.0"
 tqdm = "==4.66.3"
 urllib3 = "==1.26.19"
-whitebox = "==2.3.4"
+whitebox = "==2.3.5"
 xarray = "==2024.6.0"
 zarr = "==2.18.0"
 
diff --git a/Pipfile.lock b/Pipfile.lock
index 23f15d493..bfd938221 100644
--- a/Pipfile.lock
+++ b/Pipfile.lock
@@ -1,7 +1,7 @@
 {
     "_meta": {
         "hash": {
-            "sha256": "69e8fc55d7092cbd650b00f89e5644b3ef68a4f2ef1a00ec62d5f8645222dae0"
+            "sha256": "011f1a06daab886ce1d54566253bee9c18b67f7ca46f261b28812ce75813716e"
         },
         "pipfile-spec": 6,
         "requires": {
@@ -24,6 +24,14 @@
             "markers": "python_version >= '3.7'",
             "version": "==2.4.0"
         },
+        "aiobotocore": {
+            "hashes": [
+                "sha256:6d0b4a51d70bc33b1b4eba411076b0cc979aecbdad8e084bab202202423c0725",
+                "sha256:988eef33fd9dd4b070959cfec922278e84166950695b2160bd581623cb6a420c"
+            ],
+            "markers": "python_version >= '3.8'",
+            "version": "==2.15.0"
+        },
         "aiofiles": {
             "hashes": [
                 "sha256:1142fa8e80dbae46bb6339573ad4c8c0841358f79c6eb50a493dceca14621bad",
@@ -32,6 +40,127 @@
             "markers": "python_version >= '3.7' and python_version < '4.0'",
             "version": "==22.1.0"
         },
+        "aiohappyeyeballs": {
+            "hashes": [
+                "sha256:55a1714f084e63d49639800f95716da97a1f173d46a16dfcfda0016abb93b6b2",
+                "sha256:7ce92076e249169a13c2f49320d1967425eaf1f407522d707d59cac7628d62bd"
+            ],
+            "markers": "python_version >= '3.8'",
+            "version": "==2.4.0"
+        },
+        "aiohttp": {
+            "hashes": [
+                "sha256:02594361128f780eecc2a29939d9dfc870e17b45178a867bf61a11b2a4367277",
+                "sha256:03f2645adbe17f274444953bdea69f8327e9d278d961d85657cb0d06864814c1",
+                "sha256:074d1bff0163e107e97bd48cad9f928fa5a3eb4b9d33366137ffce08a63e37fe",
+                "sha256:0912b8a8fadeb32ff67a3ed44249448c20148397c1ed905d5dac185b4ca547bb",
+                "sha256:0d277cfb304118079e7044aad0b76685d30ecb86f83a0711fc5fb257ffe832ca",
+                "sha256:0d93400c18596b7dc4794d48a63fb361b01a0d8eb39f28800dc900c8fbdaca91",
+                "sha256:123dd5b16b75b2962d0fff566effb7a065e33cd4538c1692fb31c3bda2bfb972",
+                "sha256:17e997105bd1a260850272bfb50e2a328e029c941c2708170d9d978d5a30ad9a",
+                "sha256:18a01eba2574fb9edd5f6e5fb25f66e6ce061da5dab5db75e13fe1558142e0a3",
+                "sha256:1923a5c44061bffd5eebeef58cecf68096e35003907d8201a4d0d6f6e387ccaa",
+                "sha256:1942244f00baaacaa8155eca94dbd9e8cc7017deb69b75ef67c78e89fdad3c77",
+                "sha256:1b2c16a919d936ca87a3c5f0e43af12a89a3ce7ccbce59a2d6784caba945b68b",
+                "sha256:1c19de68896747a2aa6257ae4cf6ef59d73917a36a35ee9d0a6f48cff0f94db8",
+                "sha256:1e72589da4c90337837fdfe2026ae1952c0f4a6e793adbbfbdd40efed7c63599",
+                "sha256:22c0a23a3b3138a6bf76fc553789cb1a703836da86b0f306b6f0dc1617398abc",
+                "sha256:2c634a3207a5445be65536d38c13791904fda0748b9eabf908d3fe86a52941cf",
+                "sha256:2d21ac12dc943c68135ff858c3a989f2194a709e6e10b4c8977d7fcd67dfd511",
+                "sha256:2f1f1c75c395991ce9c94d3e4aa96e5c59c8356a15b1c9231e783865e2772699",
+                "sha256:305be5ff2081fa1d283a76113b8df7a14c10d75602a38d9f012935df20731487",
+                "sha256:33e6bc4bab477c772a541f76cd91e11ccb6d2efa2b8d7d7883591dfb523e5987",
+                "sha256:349ef8a73a7c5665cca65c88ab24abe75447e28aa3bc4c93ea5093474dfdf0ff",
+                "sha256:380f926b51b92d02a34119d072f178d80bbda334d1a7e10fa22d467a66e494db",
+                "sha256:38172a70005252b6893088c0f5e8a47d173df7cc2b2bd88650957eb84fcf5022",
+                "sha256:391cc3a9c1527e424c6865e087897e766a917f15dddb360174a70467572ac6ce",
+                "sha256:3a1c32a19ee6bbde02f1cb189e13a71b321256cc1d431196a9f824050b160d5a",
+                "sha256:4120d7fefa1e2d8fb6f650b11489710091788de554e2b6f8347c7a20ceb003f5",
+                "sha256:424ae21498790e12eb759040bbb504e5e280cab64693d14775c54269fd1d2bb7",
+                "sha256:44b324a6b8376a23e6ba25d368726ee3bc281e6ab306db80b5819999c737d820",
+                "sha256:4790f0e15f00058f7599dab2b206d3049d7ac464dc2e5eae0e93fa18aee9e7bf",
+                "sha256:4aff049b5e629ef9b3e9e617fa6e2dfeda1bf87e01bcfecaf3949af9e210105e",
+                "sha256:4b38b1570242fbab8d86a84128fb5b5234a2f70c2e32f3070143a6d94bc854cf",
+                "sha256:4d46c7b4173415d8e583045fbc4daa48b40e31b19ce595b8d92cf639396c15d5",
+                "sha256:4f1c9866ccf48a6df2b06823e6ae80573529f2af3a0992ec4fe75b1a510df8a6",
+                "sha256:4f7acae3cf1a2a2361ec4c8e787eaaa86a94171d2417aae53c0cca6ca3118ff6",
+                "sha256:54d9ddea424cd19d3ff6128601a4a4d23d54a421f9b4c0fff740505813739a91",
+                "sha256:58718e181c56a3c02d25b09d4115eb02aafe1a732ce5714ab70326d9776457c3",
+                "sha256:5ede29d91a40ba22ac1b922ef510aab871652f6c88ef60b9dcdf773c6d32ad7a",
+                "sha256:61645818edd40cc6f455b851277a21bf420ce347baa0b86eaa41d51ef58ba23d",
+                "sha256:66bf9234e08fe561dccd62083bf67400bdbf1c67ba9efdc3dac03650e97c6088",
+                "sha256:673f988370f5954df96cc31fd99c7312a3af0a97f09e407399f61583f30da9bc",
+                "sha256:676f94c5480d8eefd97c0c7e3953315e4d8c2b71f3b49539beb2aa676c58272f",
+                "sha256:6c225286f2b13bab5987425558baa5cbdb2bc925b2998038fa028245ef421e75",
+                "sha256:7384d0b87d4635ec38db9263e6a3f1eb609e2e06087f0aa7f63b76833737b471",
+                "sha256:7e2fe37ac654032db1f3499fe56e77190282534810e2a8e833141a021faaab0e",
+                "sha256:7f2bfc0032a00405d4af2ba27f3c429e851d04fad1e5ceee4080a1c570476697",
+                "sha256:7f6b639c36734eaa80a6c152a238242bedcee9b953f23bb887e9102976343092",
+                "sha256:814375093edae5f1cb31e3407997cf3eacefb9010f96df10d64829362ae2df69",
+                "sha256:8224f98be68a84b19f48e0bdc14224b5a71339aff3a27df69989fa47d01296f3",
+                "sha256:898715cf566ec2869d5cb4d5fb4be408964704c46c96b4be267442d265390f32",
+                "sha256:8989f46f3d7ef79585e98fa991e6ded55d2f48ae56d2c9fa5e491a6e4effb589",
+                "sha256:8ba01ebc6175e1e6b7275c907a3a36be48a2d487549b656aa90c8a910d9f3178",
+                "sha256:8c5c6fa16412b35999320f5c9690c0f554392dc222c04e559217e0f9ae244b92",
+                "sha256:8c6a4e5e40156d72a40241a25cc226051c0a8d816610097a8e8f517aeacd59a2",
+                "sha256:8eaf44ccbc4e35762683078b72bf293f476561d8b68ec8a64f98cf32811c323e",
+                "sha256:8fb4fc029e135859f533025bc82047334e24b0d489e75513144f25408ecaf058",
+                "sha256:9093a81e18c45227eebe4c16124ebf3e0d893830c6aca7cc310bfca8fe59d857",
+                "sha256:94c4381ffba9cc508b37d2e536b418d5ea9cfdc2848b9a7fea6aebad4ec6aac1",
+                "sha256:94fac7c6e77ccb1ca91e9eb4cb0ac0270b9fb9b289738654120ba8cebb1189c6",
+                "sha256:95c4dc6f61d610bc0ee1edc6f29d993f10febfe5b76bb470b486d90bbece6b22",
+                "sha256:975218eee0e6d24eb336d0328c768ebc5d617609affaca5dbbd6dd1984f16ed0",
+                "sha256:ad146dae5977c4dd435eb31373b3fe9b0b1bf26858c6fc452bf6af394067e10b",
+                "sha256:afe16a84498441d05e9189a15900640a2d2b5e76cf4efe8cbb088ab4f112ee57",
+                "sha256:b1c43eb1ab7cbf411b8e387dc169acb31f0ca0d8c09ba63f9eac67829585b44f",
+                "sha256:b90078989ef3fc45cf9221d3859acd1108af7560c52397ff4ace8ad7052a132e",
+                "sha256:b98e698dc34966e5976e10bbca6d26d6724e6bdea853c7c10162a3235aba6e16",
+                "sha256:ba5a8b74c2a8af7d862399cdedce1533642fa727def0b8c3e3e02fcb52dca1b1",
+                "sha256:c31ad0c0c507894e3eaa843415841995bf8de4d6b2d24c6e33099f4bc9fc0d4f",
+                "sha256:c3b9162bab7e42f21243effc822652dc5bb5e8ff42a4eb62fe7782bcbcdfacf6",
+                "sha256:c58c6837a2c2a7cf3133983e64173aec11f9c2cd8e87ec2fdc16ce727bcf1a04",
+                "sha256:c83f7a107abb89a227d6c454c613e7606c12a42b9a4ca9c5d7dad25d47c776ae",
+                "sha256:cde98f323d6bf161041e7627a5fd763f9fd829bcfcd089804a5fdce7bb6e1b7d",
+                "sha256:ce91db90dbf37bb6fa0997f26574107e1b9d5ff939315247b7e615baa8ec313b",
+                "sha256:d00f3c5e0d764a5c9aa5a62d99728c56d455310bcc288a79cab10157b3af426f",
+                "sha256:d17920f18e6ee090bdd3d0bfffd769d9f2cb4c8ffde3eb203777a3895c128862",
+                "sha256:d55f011da0a843c3d3df2c2cf4e537b8070a419f891c930245f05d329c4b0689",
+                "sha256:d742c36ed44f2798c8d3f4bc511f479b9ceef2b93f348671184139e7d708042c",
+                "sha256:d9a487ef090aea982d748b1b0d74fe7c3950b109df967630a20584f9a99c0683",
+                "sha256:d9ef084e3dc690ad50137cc05831c52b6ca428096e6deb3c43e95827f531d5ef",
+                "sha256:da452c2c322e9ce0cfef392e469a26d63d42860f829026a63374fde6b5c5876f",
+                "sha256:dc4826823121783dccc0871e3f405417ac116055bf184ac04c36f98b75aacd12",
+                "sha256:de7a5299827253023c55ea549444e058c0eb496931fa05d693b95140a947cb73",
+                "sha256:e04a1f2a65ad2f93aa20f9ff9f1b672bf912413e5547f60749fa2ef8a644e061",
+                "sha256:e1ca1ef5ba129718a8fc827b0867f6aa4e893c56eb00003b7367f8a733a9b072",
+                "sha256:ee40b40aa753d844162dcc80d0fe256b87cba48ca0054f64e68000453caead11",
+                "sha256:f071854b47d39591ce9a17981c46790acb30518e2f83dfca8db2dfa091178691",
+                "sha256:f29930bc2921cef955ba39a3ff87d2c4398a0394ae217f41cb02d5c26c8b1b77",
+                "sha256:f489a2c9e6455d87eabf907ac0b7d230a9786be43fbe884ad184ddf9e9c1e385",
+                "sha256:f5bf3ead3cb66ab990ee2561373b009db5bc0e857549b6c9ba84b20bc462e172",
+                "sha256:f6f18898ace4bcd2d41a122916475344a87f1dfdec626ecde9ee802a711bc569",
+                "sha256:f8112fb501b1e0567a1251a2fd0747baae60a4ab325a871e975b7bb67e59221f",
+                "sha256:fd31f176429cecbc1ba499d4aba31aaccfea488f418d60376b911269d3b883c5"
+            ],
+            "markers": "python_version >= '3.8'",
+            "version": "==3.10.5"
+        },
+        "aioitertools": {
+            "hashes": [
+                "sha256:c2a9055b4fbb7705f561b9d86053e8af5d10cc845d22c32008c43490b2d8dd6b",
+                "sha256:fc1f5fac3d737354de8831cbba3eb04f79dd649d8f3afb4c5b114925e662a796"
+            ],
+            "markers": "python_version >= '3.8'",
+            "version": "==0.12.0"
+        },
+        "aiosignal": {
+            "hashes": [
+                "sha256:54cd96e15e1649b75d6c87526a6ff0b6c1b0dd3459f43d9ca11d48c339b68cfc",
+                "sha256:f8376fb07dd1e86a584e4fcdec80b36b7f81aac666ebc724e2c090300dd83b17"
+            ],
+            "markers": "python_version >= '3.7'",
+            "version": "==1.3.1"
+        },
         "aiosqlite": {
             "hashes": [
                 "sha256:36a1deaca0cac40ebe32aac9977a6e2bbc7f5189f23f4a54d5908986729e5bd6",
@@ -111,6 +240,14 @@
             ],
             "version": "==2.4.1"
         },
+        "async-timeout": {
+            "hashes": [
+                "sha256:4640d96be84d82d02ed59ea2b7105a0f7b33abe8703703cd0ab0bf87c427522f",
+                "sha256:7405140ff1230c310e51dc27b3145b9092d659ce68ff733fb0cefe3ee42be028"
+            ],
+            "markers": "python_version < '3.11'",
+            "version": "==4.0.3"
+        },
         "attrs": {
             "hashes": [
                 "sha256:5cfb1b9148b5b086569baec03f20d7b6bf3bcacc9a42bebf87ffaaca362f6346",
@@ -210,11 +347,11 @@
         },
         "botocore": {
             "hashes": [
-                "sha256:bce42967d0f03b79cf25b2b6a36221fb2fb15f98e6fa4155b66b672ab192013b",
-                "sha256:e599cef6305e950a212f85adb86c1f4713d4b2678b3c2ec54df6b8e2dbe9ef2f"
+                "sha256:1b48c94e8a4bbe23143f3d1c21a32b9ffc7476b651ef42371ab45d678f6dbfbc",
+                "sha256:3564a980d95ff2861a6ca74313173d8778aa659125c63cf49c93ad23896c63b1"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==1.35.1"
+            "version": "==1.35.16"
         },
         "bottleneck": {
             "hashes": [
@@ -371,76 +508,76 @@
         },
         "cffi": {
             "hashes": [
-                "sha256:011aff3524d578a9412c8b3cfaa50f2c0bd78e03eb7af7aa5e0df59b158efb2f",
-                "sha256:0a048d4f6630113e54bb4b77e315e1ba32a5a31512c31a273807d0027a7e69ab",
-                "sha256:0bb15e7acf8ab35ca8b24b90af52c8b391690ef5c4aec3d31f38f0d37d2cc499",
-                "sha256:0d46ee4764b88b91f16661a8befc6bfb24806d885e27436fdc292ed7e6f6d058",
-                "sha256:0e60821d312f99d3e1569202518dddf10ae547e799d75aef3bca3a2d9e8ee693",
-                "sha256:0fdacad9e0d9fc23e519efd5ea24a70348305e8d7d85ecbb1a5fa66dc834e7fb",
-                "sha256:14b9cbc8f7ac98a739558eb86fabc283d4d564dafed50216e7f7ee62d0d25377",
-                "sha256:17c6d6d3260c7f2d94f657e6872591fe8733872a86ed1345bda872cfc8c74885",
-                "sha256:1a2ddbac59dc3716bc79f27906c010406155031a1c801410f1bafff17ea304d2",
-                "sha256:2404f3de742f47cb62d023f0ba7c5a916c9c653d5b368cc966382ae4e57da401",
-                "sha256:24658baf6224d8f280e827f0a50c46ad819ec8ba380a42448e24459daf809cf4",
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@@ -631,53 +768,74 @@
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@@ -2636,11 +2993,11 @@
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@@ -2806,10 +3163,10 @@
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+                "sha256:c15b1ca23d7c5f33cc2cb0a0d6aaacf893792271cddff0edbd6a40e8319bc113",
+                "sha256:ca64b3089a6d9b9363cd3546f8978229dcbb737aceb2c12144ee3f70f95684b7",
+                "sha256:f60021ec1574e56632be2a36b946f8143bf4e5e6af4a06d85281adc22938e0dd",
+                "sha256:f763897fe92d0e903aa4847b0aec0e68cadfff77e8a0687cabd946c89d17e675",
+                "sha256:f8b0ccd4a902836493e026c03256e8b206656f91fbcc4fde28c57a5b752561f1",
+                "sha256:f932a02c3f4956dfb981391ab24bda1dbd90fe3d628e4b42caef3e041c67707a"
             ],
             "markers": "python_version >= '3.9'",
-            "version": "==1.5.1"
+            "version": "==1.5.2"
         },
         "scipy": {
             "hashes": [
@@ -3456,11 +3813,11 @@
         },
         "setuptools": {
             "hashes": [
-                "sha256:3c08705fadfc8c7c445cf4d98078f0fafb9225775b2b4e8447e40348f82597c0",
-                "sha256:f2bfcce7ae1784d90b04c57c2802e8649e1976530bb25dc72c2b078d3ecf4864"
+                "sha256:35ab7fd3bcd95e6b7fd704e4a1539513edad446c097797f2985e0e4b960772f2",
+                "sha256:d59a21b17a275fb872a9c3dae73963160ae079f1049ed956880cd7c09b120538"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==73.0.0"
+            "version": "==75.1.0"
         },
         "shapely": {
             "hashes": [
@@ -3790,11 +4147,11 @@
         },
         "types-python-dateutil": {
             "hashes": [
-                "sha256:5d2f2e240b86905e40944dd787db6da9263f0deabef1076ddaed797351ec0202",
-                "sha256:6b8cb66d960771ce5ff974e9dd45e38facb81718cc1e208b10b1baccbfdbee3b"
+                "sha256:27c8cc2d058ccb14946eebcaaa503088f4f6dbc4fb6093d3d456a49aef2753f6",
+                "sha256:9706c3b68284c25adffc47319ecc7947e5bb86b3773f843c73906fd598bc176e"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==2.9.0.20240316"
+            "version": "==2.9.0.20240906"
         },
         "typing-extensions": {
             "hashes": [
@@ -3837,11 +4194,11 @@
         },
         "virtualenv": {
             "hashes": [
-                "sha256:4c43a2a236279d9ea36a0d76f98d84bd6ca94ac4e0f4a3b9d46d05e10fea542a",
-                "sha256:8cc4a31139e796e9a7de2cd5cf2489de1217193116a8fd42328f1bd65f434589"
+                "sha256:48f2695d9809277003f30776d155615ffc11328e6a0a8c1f0ec80188d7874a55",
+                "sha256:c17f4e0f3e6036e9f26700446f85c76ab11df65ff6d8a9cbfad9f71aabfcf23c"
             ],
             "markers": "python_version >= '3.7'",
-            "version": "==20.26.3"
+            "version": "==20.26.4"
         },
         "wcwidth": {
             "hashes": [
@@ -3874,19 +4231,19 @@
         },
         "whitebox": {
             "hashes": [
-                "sha256:3479c8127b1928dd0457b6680b9ee4469d0735b2bb220178c678af303d868ef0",
-                "sha256:4322c5a3b42f1f04a3c80640253b672242e0aefb6b6dea70752f00a220f6d7ed"
+                "sha256:4a9fb6da799dc0f99daf139d6dbe573ca12af3785c48708e56728b8372c6a2a7",
+                "sha256:dd9db85bbb687356741afe935dd25286a2b31e7bf87b74c60b655cdf84a9d922"
             ],
             "index": "pypi",
-            "version": "==2.3.4"
+            "version": "==2.3.5"
         },
         "widgetsnbextension": {
             "hashes": [
-                "sha256:55d4d6949d100e0d08b94948a42efc3ed6dfdc0e9468b2c4b128c9a2ce3a7a36",
-                "sha256:8b22a8f1910bfd188e596fe7fc05dcbd87e810c8a4ba010bdb3da86637398474"
+                "sha256:74b2692e8500525cc38c2b877236ba51d34541e6385eeed5aec15a70f88a6c71",
+                "sha256:ffcb67bc9febd10234a362795f643927f4e0c05d9342c727b65d2384f8feacb6"
             ],
             "markers": "python_version >= '3.7'",
-            "version": "==4.0.11"
+            "version": "==4.0.13"
         },
         "wrapt": {
             "hashes": [
@@ -3991,11 +4348,11 @@
         },
         "xyzservices": {
             "hashes": [
-                "sha256:58c1bdab4257d2551b9ef91cd48571f77b7c4d2bc45bf5e3c05ac97b3a4d7282",
-                "sha256:fecb2508f0f2b71c819aecf5df2c03cef001c56a4b49302e640f3b34710d25e4"
+                "sha256:68fb8353c9dbba4f1ff6c0f2e5e4e596bb9e1db7f94f4f7dfbcb26e25aa66fde",
+                "sha256:776ae82b78d6e5ca63dd6a94abb054df8130887a4a308473b54a6bd364de8644"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==2024.6.0"
+            "version": "==2024.9.0"
         },
         "y-py": {
             "hashes": [
@@ -4076,6 +4433,104 @@
             ],
             "version": "==0.6.2"
         },
+        "yarl": {
+            "hashes": [
+                "sha256:01a8697ec24f17c349c4f655763c4db70eebc56a5f82995e5e26e837c6eb0e49",
+                "sha256:02da8759b47d964f9173c8675710720b468aa1c1693be0c9c64abb9d8d9a4867",
+                "sha256:04293941646647b3bfb1719d1d11ff1028e9c30199509a844da3c0f5919dc520",
+                "sha256:067b961853c8e62725ff2893226fef3d0da060656a9827f3f520fb1d19b2b68a",
+                "sha256:077da604852be488c9a05a524068cdae1e972b7dc02438161c32420fb4ec5e14",
+                "sha256:09696438cb43ea6f9492ef237761b043f9179f455f405279e609f2bc9100212a",
+                "sha256:0b8486f322d8f6a38539136a22c55f94d269addb24db5cb6f61adc61eabc9d93",
+                "sha256:0ea9682124fc062e3d931c6911934a678cb28453f957ddccf51f568c2f2b5e05",
+                "sha256:0f351fa31234699d6084ff98283cb1e852270fe9e250a3b3bf7804eb493bd937",
+                "sha256:14438dfc5015661f75f85bc5adad0743678eefee266ff0c9a8e32969d5d69f74",
+                "sha256:15061ce6584ece023457fb8b7a7a69ec40bf7114d781a8c4f5dcd68e28b5c53b",
+                "sha256:15439f3c5c72686b6c3ff235279630d08936ace67d0fe5c8d5bbc3ef06f5a420",
+                "sha256:17b5a386d0d36fb828e2fb3ef08c8829c1ebf977eef88e5367d1c8c94b454639",
+                "sha256:18ac56c9dd70941ecad42b5a906820824ca72ff84ad6fa18db33c2537ae2e089",
+                "sha256:1bb2d9e212fb7449b8fb73bc461b51eaa17cc8430b4a87d87be7b25052d92f53",
+                "sha256:1e969fa4c1e0b1a391f3fcbcb9ec31e84440253325b534519be0d28f4b6b533e",
+                "sha256:1fa2e7a406fbd45b61b4433e3aa254a2c3e14c4b3186f6e952d08a730807fa0c",
+                "sha256:2164cd9725092761fed26f299e3f276bb4b537ca58e6ff6b252eae9631b5c96e",
+                "sha256:21a7c12321436b066c11ec19c7e3cb9aec18884fe0d5b25d03d756a9e654edfe",
+                "sha256:238a21849dd7554cb4d25a14ffbfa0ef380bb7ba201f45b144a14454a72ffa5a",
+                "sha256:250e888fa62d73e721f3041e3a9abf427788a1934b426b45e1b92f62c1f68366",
+                "sha256:25861303e0be76b60fddc1250ec5986c42f0a5c0c50ff57cc30b1be199c00e63",
+                "sha256:267b24f891e74eccbdff42241c5fb4f974de2d6271dcc7d7e0c9ae1079a560d9",
+                "sha256:27fcb271a41b746bd0e2a92182df507e1c204759f460ff784ca614e12dd85145",
+                "sha256:2909fa3a7d249ef64eeb2faa04b7957e34fefb6ec9966506312349ed8a7e77bf",
+                "sha256:3257978c870728a52dcce8c2902bf01f6c53b65094b457bf87b2644ee6238ddc",
+                "sha256:327c724b01b8641a1bf1ab3b232fb638706e50f76c0b5bf16051ab65c868fac5",
+                "sha256:3de5292f9f0ee285e6bd168b2a77b2a00d74cbcfa420ed078456d3023d2f6dff",
+                "sha256:3fce4da3703ee6048ad4138fe74619c50874afe98b1ad87b2698ef95bf92c96d",
+                "sha256:3ff6b1617aa39279fe18a76c8d165469c48b159931d9b48239065767ee455b2b",
+                "sha256:400cd42185f92de559d29eeb529e71d80dfbd2f45c36844914a4a34297ca6f00",
+                "sha256:4179522dc0305c3fc9782549175c8e8849252fefeb077c92a73889ccbcd508ad",
+                "sha256:4307d9a3417eea87715c9736d050c83e8c1904e9b7aada6ce61b46361b733d92",
+                "sha256:476e20c433b356e16e9a141449f25161e6b69984fb4cdbd7cd4bd54c17844998",
+                "sha256:489fa8bde4f1244ad6c5f6d11bb33e09cf0d1d0367edb197619c3e3fc06f3d91",
+                "sha256:48a28bed68ab8fb7e380775f0029a079f08a17799cb3387a65d14ace16c12e2b",
+                "sha256:48dfd117ab93f0129084577a07287376cc69c08138694396f305636e229caa1a",
+                "sha256:4973eac1e2ff63cf187073cd4e1f1148dcd119314ab79b88e1b3fad74a18c9d5",
+                "sha256:498442e3af2a860a663baa14fbf23fb04b0dd758039c0e7c8f91cb9279799bff",
+                "sha256:501c503eed2bb306638ccb60c174f856cc3246c861829ff40eaa80e2f0330367",
+                "sha256:504cf0d4c5e4579a51261d6091267f9fd997ef58558c4ffa7a3e1460bd2336fa",
+                "sha256:61a5f2c14d0a1adfdd82258f756b23a550c13ba4c86c84106be4c111a3a4e413",
+                "sha256:637c7ddb585a62d4469f843dac221f23eec3cbad31693b23abbc2c366ad41ff4",
+                "sha256:66b63c504d2ca43bf7221a1f72fbe981ff56ecb39004c70a94485d13e37ebf45",
+                "sha256:67459cf8cf31da0e2cbdb4b040507e535d25cfbb1604ca76396a3a66b8ba37a6",
+                "sha256:688654f8507464745ab563b041d1fb7dab5d9912ca6b06e61d1c4708366832f5",
+                "sha256:6907daa4b9d7a688063ed098c472f96e8181733c525e03e866fb5db480a424df",
+                "sha256:69721b8effdb588cb055cc22f7c5105ca6fdaa5aeb3ea09021d517882c4a904c",
+                "sha256:6d23754b9939cbab02c63434776df1170e43b09c6a517585c7ce2b3d449b7318",
+                "sha256:7175a87ab8f7fbde37160a15e58e138ba3b2b0e05492d7351314a250d61b1591",
+                "sha256:72bf26f66456baa0584eff63e44545c9f0eaed9b73cb6601b647c91f14c11f38",
+                "sha256:74db2ef03b442276d25951749a803ddb6e270d02dda1d1c556f6ae595a0d76a8",
+                "sha256:750f656832d7d3cb0c76be137ee79405cc17e792f31e0a01eee390e383b2936e",
+                "sha256:75e0ae31fb5ccab6eda09ba1494e87eb226dcbd2372dae96b87800e1dcc98804",
+                "sha256:768ecc550096b028754ea28bf90fde071c379c62c43afa574edc6f33ee5daaec",
+                "sha256:7d51324a04fc4b0e097ff8a153e9276c2593106a811704025bbc1d6916f45ca6",
+                "sha256:7e975a2211952a8a083d1b9d9ba26472981ae338e720b419eb50535de3c02870",
+                "sha256:8215f6f21394d1f46e222abeb06316e77ef328d628f593502d8fc2a9117bde83",
+                "sha256:8258c86f47e080a258993eed877d579c71da7bda26af86ce6c2d2d072c11320d",
+                "sha256:8418c053aeb236b20b0ab8fa6bacfc2feaaf7d4683dd96528610989c99723d5f",
+                "sha256:87f020d010ba80a247c4abc335fc13421037800ca20b42af5ae40e5fd75e7909",
+                "sha256:884eab2ce97cbaf89f264372eae58388862c33c4f551c15680dd80f53c89a269",
+                "sha256:8a336eaa7ee7e87cdece3cedb395c9657d227bfceb6781295cf56abcd3386a26",
+                "sha256:8aef1b64da41d18026632d99a06b3fefe1d08e85dd81d849fa7c96301ed22f1b",
+                "sha256:8aef97ba1dd2138112890ef848e17d8526fe80b21f743b4ee65947ea184f07a2",
+                "sha256:8ed653638ef669e0efc6fe2acb792275cb419bf9cb5c5049399f3556995f23c7",
+                "sha256:9361628f28f48dcf8b2f528420d4d68102f593f9c2e592bfc842f5fb337e44fd",
+                "sha256:946eedc12895873891aaceb39bceb484b4977f70373e0122da483f6c38faaa68",
+                "sha256:94d0caaa912bfcdc702a4204cd5e2bb01eb917fc4f5ea2315aa23962549561b0",
+                "sha256:964a428132227edff96d6f3cf261573cb0f1a60c9a764ce28cda9525f18f7786",
+                "sha256:999bfee0a5b7385a0af5ffb606393509cfde70ecca4f01c36985be6d33e336da",
+                "sha256:a08ea567c16f140af8ddc7cb58e27e9138a1386e3e6e53982abaa6f2377b38cc",
+                "sha256:a28b70c9e2213de425d9cba5ab2e7f7a1c8ca23a99c4b5159bf77b9c31251447",
+                "sha256:a34e1e30f1774fa35d37202bbeae62423e9a79d78d0874e5556a593479fdf239",
+                "sha256:a4264515f9117be204935cd230fb2a052dd3792789cc94c101c535d349b3dab0",
+                "sha256:a7915ea49b0c113641dc4d9338efa9bd66b6a9a485ffe75b9907e8573ca94b84",
+                "sha256:aac44097d838dda26526cffb63bdd8737a2dbdf5f2c68efb72ad83aec6673c7e",
+                "sha256:b91044952da03b6f95fdba398d7993dd983b64d3c31c358a4c89e3c19b6f7aef",
+                "sha256:ba444bdd4caa2a94456ef67a2f383710928820dd0117aae6650a4d17029fa25e",
+                "sha256:c2dc4250fe94d8cd864d66018f8344d4af50e3758e9d725e94fecfa27588ff82",
+                "sha256:c35f493b867912f6fda721a59cc7c4766d382040bdf1ddaeeaa7fa4d072f4675",
+                "sha256:c92261eb2ad367629dc437536463dc934030c9e7caca861cc51990fe6c565f26",
+                "sha256:ce928c9c6409c79e10f39604a7e214b3cb69552952fbda8d836c052832e6a979",
+                "sha256:d95b52fbef190ca87d8c42f49e314eace4fc52070f3dfa5f87a6594b0c1c6e46",
+                "sha256:dae7bd0daeb33aa3e79e72877d3d51052e8b19c9025ecf0374f542ea8ec120e4",
+                "sha256:e286580b6511aac7c3268a78cdb861ec739d3e5a2a53b4809faef6b49778eaff",
+                "sha256:e4b53f73077e839b3f89c992223f15b1d2ab314bdbdf502afdc7bb18e95eae27",
+                "sha256:e8f63904df26d1a66aabc141bfd258bf738b9bc7bc6bdef22713b4f5ef789a4c",
+                "sha256:f3a6d90cab0bdf07df8f176eae3a07127daafcf7457b997b2bf46776da2c7eb7",
+                "sha256:f41fa79114a1d2eddb5eea7b912d6160508f57440bd302ce96eaa384914cd265",
+                "sha256:f46f81501160c28d0c0b7333b4f7be8983dbbc161983b6fb814024d1b4952f79",
+                "sha256:f61db3b7e870914dbd9434b560075e0366771eecbe6d2b5561f5bc7485f39efd"
+            ],
+            "markers": "python_version >= '3.8'",
+            "version": "==1.11.1"
+        },
         "ypy-websocket": {
             "hashes": [
                 "sha256:43a001473f5c8abcf182f603049cf305cbc855ad8deaa9dfa0f3b5a7cea9d0ff",
@@ -4103,11 +4558,11 @@
         },
         "zipp": {
             "hashes": [
-                "sha256:0145e43d89664cfe1a2e533adc75adafed82fe2da404b4bbb6b026c0157bdb31",
-                "sha256:58da6168be89f0be59beb194da1250516fdaa062ccebd30127ac65d30045e10d"
+                "sha256:a817ac80d6cf4b23bf7f2828b7cabf326f15a001bea8b1f9b49631780ba28350",
+                "sha256:bc9eb26f4506fda01b81bcde0ca78103b6e62f991b381fec825435c836edbc29"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==3.20.0"
+            "version": "==3.20.2"
         }
     },
     "develop": {
@@ -4136,19 +4591,19 @@
         },
         "executing": {
             "hashes": [
-                "sha256:35afe2ce3affba8ee97f2d69927fa823b08b472b7b994e36a52a964b93d16147",
-                "sha256:eac49ca94516ccc753f9fb5ce82603156e590b27525a8bc32cce8ae302eb61bc"
+                "sha256:8d63781349375b5ebccc3142f4b30350c0cd9c79f921cde38be2be4637e98eaf",
+                "sha256:8ea27ddd260da8150fa5a708269c4a10e76161e2496ec3e587da9e3c0fe4b9ab"
             ],
-            "markers": "python_version >= '3.5'",
-            "version": "==2.0.1"
+            "markers": "python_version >= '3.8'",
+            "version": "==2.1.0"
         },
         "ipython": {
             "hashes": [
-                "sha256:1cec0fbba8404af13facebe83d04436a7434c7400e59f47acf467c64abd0956c",
-                "sha256:e6b347c27bdf9c32ee9d31ae85defc525755a1869f14057e900675b9e8d6e6ff"
+                "sha256:0b99a2dc9f15fd68692e898e5568725c6d49c527d36a9fb5960ffbdeaa82ff7e",
+                "sha256:f68b3cb8bde357a5d7adc9598d57e22a45dfbea19eb6b98286fa3b288c9cd55c"
             ],
             "markers": "python_version >= '3.10'",
-            "version": "==8.26.0"
+            "version": "==8.27.0"
         },
         "jedi": {
             "hashes": [
diff --git a/fim_pre_processing.sh b/fim_pre_processing.sh
index d89c554ce..bd556940c 100755
--- a/fim_pre_processing.sh
+++ b/fim_pre_processing.sh
@@ -122,7 +122,7 @@ fi
 # outputsDir & workDir come from the Dockerfile
 outputDestDir=$outputsDir/$runName
 tempRunDir=$workDir/$runName
-export WBT_PATH=${tempRunDir}/whitebox_temp
+# export WBT_PATH=${tempRunDir}/whitebox_temp
 
 # default values
 if [ "$envFile" = "" ]; then envFile=/$projectDir/config/params_template.env; fi
diff --git a/src/agreedem.py b/src/agreedem.py
index b38c7f359..7384c1813 100755
--- a/src/agreedem.py
+++ b/src/agreedem.py
@@ -50,6 +50,7 @@ def agreedem(
     # Set wbt envs
     wbt = whitebox.WhiteboxTools()
     wbt.set_verbose_mode(False)
+    wbt.set_whitebox_dir(os.environ.get("WBT_PATH"))
 
     # ------------------------------------------------------------------
     # 1. From Hellweger documentation: Compute the vector grid
diff --git a/src/unique_pixel_and_allocation.py b/src/unique_pixel_and_allocation.py
index e5c71e61d..14c3f68fa 100755
--- a/src/unique_pixel_and_allocation.py
+++ b/src/unique_pixel_and_allocation.py
@@ -34,6 +34,7 @@ def stream_pixel_zones(stream_pixels, unique_stream_pixels):
     # Set wbt envs
     wbt = whitebox.WhiteboxTools()
     wbt.set_verbose_mode(False)
+    wbt.set_whitebox_dir(os.environ.get("WBT_PATH"))
 
     workspace = os.path.dirname(unique_stream_pixels)
     base = os.path.basename(unique_stream_pixels)