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M add_science_center_validation_roadmap_v1.sh
M core/laplace.hpp
M core/laplace/exact_gradient_workspace.hpp
M core/optimizer.hpp
D examples/pifsc_opakapaka/had_implementation.cpp
D examples/sefsc_red_snapper/README.md
D examples/sefsc_red_snapper/compare_quadra_tmb_fit.py
D examples/sefsc_red_snapper/data/README.md
D examples/sefsc_red_snapper/data/red_snapper_projection_scenarios.csv
D examples/sefsc_red_snapper/data/synthetic_red_snapper_observations.csv
D examples/sefsc_red_snapper/quadra/README.md
D examples/sefsc_red_snapper/quadra/evaluate_red_snapper_objective
D examples/sefsc_red_snapper/quadra/evaluate_red_snapper_objective.cpp
D examples/sefsc_red_snapper/quadra/red_snapper_adgraph_global.cpp
D examples/sefsc_red_snapper/quadra/red_snapper_age_structured
D examples/sefsc_red_snapper/quadra/red_snapper_age_structured.cpp
D examples/sefsc_red_snapper/quadra/red_snapper_age_structured.hpp
D examples/sefsc_red_snapper/quadra/red_snapper_level0
D examples/sefsc_red_snapper/quadra/red_snapper_level0.cpp
D examples/sefsc_red_snapper/quadra/red_snapper_model.hpp
D examples/sefsc_red_snapper/quadra/red_snapper_objective.hpp
D examples/sefsc_red_snapper/quadra/red_snapper_quadra_fit
D examples/sefsc_red_snapper/quadra/red_snapper_quadra_fit.cpp
D examples/sefsc_red_snapper/run_quadra_vs_tmb_comparison.sh
D examples/sefsc_red_snapper/run_red_snapper_age_structured.sh
D examples/sefsc_red_snapper/run_red_snapper_level0.sh
D examples/sefsc_red_snapper/run_red_snapper_objective.sh
D examples/sefsc_red_snapper/run_red_snapper_quadra_fit.sh
D examples/sefsc_red_snapper/tmb/README.md
D examples/sefsc_red_snapper/tmb/red_snapper_tmb.cpp
D examples/sefsc_red_snapper/tmb/run_red_snapper_tmb_fit.R
D examples/sefsc_red_snapper/validation/age_composition_likelihood_checklist.md
D examples/sefsc_red_snapper/validation/age_structured_deterministic_checklist.md
D examples/sefsc_red_snapper/validation/level0_checklist.md
D examples/sefsc_red_snapper/validation/objective_checklist.md
D examples/sefsc_red_snapper/validation/quadra_fit_checklist.md
D examples/sefsc_red_snapper/validation/selectivity_estimation_checklist.md
D examples/sefsc_red_snapper/validation/validation_plan.md
?? a.out
?? a.out.dSYM/
?? add_laplace_result_component_fields.sh
?? add_sefsc_red_snapper_age_comp_likelihood_v1.sh
?? add_sefsc_red_snapper_age_structured_v1.sh
?? add_sefsc_red_snapper_fitted_trajectory_v1.sh
?? add_sefsc_red_snapper_level0_scaffold_v1.sh
?? add_sefsc_red_snapper_objective_v1.sh
?? add_sefsc_red_snapper_quadra_fit_v1.sh
?? add_sefsc_red_snapper_recruitment_devs_v1.sh
?? add_sefsc_red_snapper_residual_diagnostics_v1.sh
?? add_sefsc_red_snapper_selectivity_estimation_v1.sh
?? add_sefsc_red_snapper_selectivity_output_v1.sh
?? add_sefsc_red_snapper_tmb_comparison_v1.sh
?? bad_laplace_tail_removed.txt
?? cleanup_laplace_diagnostics_to_header.sh
?? core/laplace.hpp.backup_force_remove_bad_laplace_tail_block_20260613_111035
?? core/laplace.hpp.bad-gradient-diagnostic.20260613_110931.bak
?? core/laplace.hpp.bad_gradient_diagnostics.20260613_110717
?? core/laplace.hpp.bak.gradient_diagnostics.20260613_110318
?? core/laplace.hpp.before_diagnostics_header_cleanup.20260613_170558
?? core/laplace.hpp.before_du_dtheta_norm_diagnostic.20260613_144107
?? core/laplace.hpp.before_hdot_exact_vs_fd_trace_diagnostic.20260613_142755
?? core/laplace.hpp.before_laplace_result_component_fields.20260613_113223
?? core/laplace.hpp.before_logdet_theta_only_diagnostic.20260613_142400
?? core/laplace.hpp.broken_after_bad_cleanup.20260613_111249
?? core/laplace.hpp.broken_after_bad_cleanup.20260613_112529
?? core/laplace.hpp.pre_bad_tail_cleanup.20260613_111124.bak
?? core/laplace.hpp.saved_before_git_restore.20260613_112952
?? core/laplace/laplace_gradient_diagnostics.hpp
?? docs/exact_laplace_gradient_validation.md
?? examples/NMFS/
?? examples/pifsc_opakapaka/quadra/opakapaka_projection
?? examples/pifsc_opakapaka/validation/README.md
?? force_remove_bad_laplace_tail_block.sh
?? git_restore_laplace_hpp_clean.sh
?? install_du_dtheta_norm_diagnostic.sh
?? install_hdot_exact_vs_fd_trace_diagnostic.sh
?? install_logdet_theta_only_vs_total_diagnostic.sh
?? install_quadra_gradient_diagnostics.sh
?? install_tmb_manual_profiled_logdet_fd_diagnostic.sh
?? install_tmb_profiled_logdet_fd_diagnostic.sh
?? move_assessment_examples_to_nmfs.sh
?? nmfs_example_move_changed_files_20260613_173133.txt
?? restore_laplace_hpp_safely.sh
?? restore_laplace_hpp_safely_macos.sh
?? restore_quadra_laplace_before_gradient_diagnostics.sh
?? tests/test_hdot_validation