Initial 2025 tech doc build

Author: BBeltz1

_bookdown.yml

@@ -57,7 +57,7 @@ rmd_files:
     -   "chapters/grayseal.Rmd"
     -   "chapters/seabird_ne.Rmd"
     -   "chapters/cetacean_acoustic.Rmd"
-    -   "chapters/wea_sound"
+    -   "chapters/wea_sound.Rmd"
     -   "chapters/species_groupings.rmd"  
 #
 #

packages.bib

@@ -3,34 +3,40 @@ @Manual{R-base
   author = {{R Core Team}},
   organization = {R Foundation for Statistical Computing},
   address = {Vienna, Austria},
-  year = {2022},
+  year = {2023},
   url = {https://www.R-project.org/},
 }
 
 @Manual{R-bookdown,
   title = {bookdown: Authoring Books and Technical Documents with R Markdown},
   author = {Yihui Xie},
   year = {2024},
-  note = {R package version 0.38},
+  note = {R package version 0.41},
   url = {https://github.com/rstudio/bookdown},
 }
 
 @Manual{R-dplyr,
   title = {dplyr: A Grammar of Data Manipulation},
   author = {Hadley Wickham and Romain François and Lionel Henry and Kirill Müller and Davis Vaughan},
-  year = {2024},
-  note = {R package version 1.1.4.9000},
+  year = {2023},
+  note = {R package version 1.1.4},
   url = {https://dplyr.tidyverse.org},
 }
 
 @Manual{R-DT,
   title = {DT: A Wrapper of the JavaScript Library DataTables},
   author = {Yihui Xie and Joe Cheng and Xianying Tan},
-  year = {2024},
-  note = {R package version 0.32},
+  year = {2023},
+  note = {R package version 0.29},
   url = {https://github.com/rstudio/DT},
 }
 
+@Manual{R-ecodata,
+  title = {ecodata: Documentation of Ecosystem Indicator Reporting},
+  author = {Brandon Beltz and Kimberly Bastille and Sean Hardison},
+  note = {R package version 5.0.2},
+  year = {2024},
+}
 
 @Manual{R-forcats,
   title = {forcats: Tools for Working with Categorical Variables (Factors)},
@@ -60,7 +66,7 @@ @Manual{R-htmlwidgets
   title = {htmlwidgets: HTML Widgets for R},
   author = {Ramnath Vaidyanathan and Yihui Xie and JJ Allaire and Joe Cheng and Carson Sievert and Kenton Russell},
   year = {2023},
-  note = {R package version 1.6.4},
+  note = {R package version 1.6.2},
   url = {https://github.com/ramnathv/htmlwidgets},
 }
 
@@ -75,8 +81,8 @@ @Manual{R-kableExtra
 @Manual{R-knitr,
   title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
   author = {Yihui Xie},
-  year = {2023},
-  note = {R package version 1.45},
+  year = {2024},
+  note = {R package version 1.49},
   url = {https://yihui.org/knitr/},
 }
 
@@ -88,6 +94,13 @@ @Manual{R-lubridate
   url = {https://lubridate.tidyverse.org},
 }
 
+@Manual{R-miniUI,
+  title = {miniUI: Shiny UI Widgets for Small Screens},
+  author = {Joe Cheng},
+  year = {2018},
+  note = {R package version 0.1.1.1},
+  url = {https://CRAN.R-project.org/package=miniUI},
+}
 
 @Manual{R-purrr,
   title = {purrr: Functional Programming Tools},
@@ -100,33 +113,33 @@ @Manual{R-purrr
 @Manual{R-readr,
   title = {readr: Read Rectangular Text Data},
   author = {Hadley Wickham and Jim Hester and Jennifer Bryan},
-  year = {2022},
-  note = {R package version 2.1.2},
+  year = {2023},
+  note = {R package version 2.1.4},
   url = {https://readr.tidyverse.org},
 }
 
 @Manual{R-rmarkdown,
   title = {rmarkdown: Dynamic Documents for R},
   author = {JJ Allaire and Yihui Xie and Christophe Dervieux and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
   year = {2024},
-  note = {R package version 2.27},
+  note = {R package version 2.29},
   url = {https://github.com/rstudio/rmarkdown},
 }
 
 @Manual{R-servr,
   title = {servr: A Simple HTTP Server to Serve Static Files or Dynamic Documents},
   author = {Yihui Xie},
   year = {2024},
-  note = {R package version 0.29},
+  note = {R package version 0.30},
   url = {https://github.com/yihui/servr},
 }
 
 @Manual{R-stocksmart,
   title = {stocksmart: Provides access to NOAAs stock SMART data},
   author = {Andy Beet},
-  note = {R package version 0.6.26},
+  year = {2023},
+  note = {R package version 0.6.12},
   url = {https://github.com/NOAA-EDAB/stocksmart},
-  year = {2024},
 }
 
 @Manual{R-stringr,