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chapters/bottom_temp_model_gridded.Rmd

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**Found in**: State of the Ecosystem - Gulf of Maine & Georges Bank (2023+); State of the Ecosystem - Mid-Atlantic Bight (2023+)
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**Contributor(s)**: Joe Caracappa, Hubert du Pontavice, Vincent Saba, Zhuomin Chen
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**Contributor(s)**: Joe Caracappa, Vincent Saba, Zhuomin Chen
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**Data steward**: Joe Caracappa, [email protected]
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chapters/cetacean_acoustic.Rmd

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**Indicator category**: Published methods
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**Contributor(s)**: Sofie Van Parijs, Annamaria DeAngelis, Tyler Aldrich, Rochelle Gordon, Amanda Holdman, Jessica McCordic, Xavier Mouy, Tim Rowell, Sara Tennant, Annabel Westell, and Genevieve Davis
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**Contributor(s)**: Sofie Van Parijs, Annamaria DeAngelis, Tyler Aldrich, Rochelle Gordon, Amanda Holdman, Xavier Mouy, Tim Rowell, Sara Tennant, Annabel Westell, and Genevieve Davis
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**Data steward**: Rebecca Van Hoeck <[email protected]>
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chapters/cetacean_dist.Rmd

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**Indicator category**: Published methods.
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**Contributor(s)**: Sam Chavez, Elizabeth Josephson, Debra Palka
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**Contributor(s)**: Sam Chavez, Debra Palka
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**Data steward**: Debra Palka <[email protected]>
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chapters/cold_pool.Rmd

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**Indicator category**:Published methods, Extensive analysis, not yet published
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**Contributor(s)**: Hubert du Pontavice, Vincent Saba, Zhuomin Chen
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**Contributor(s)**: Joseph Caracappa, Vincent Saba, Zhuomin Chen
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**Data steward**: Kimberly Bastille <Kimberly.bastille@noaa.gov>
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**Data steward**: Joseph Caracappa <joseph.caracappa@noaa.gov>
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**Point of contact**: Hubert du Pontavice <hubert.dupontavice@noaa.gov>
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**Point of contact**: Joseph Caracappa <joseph.caracappa@noaa.gov>
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**Public availability statement**: Source data are NOT publicly available. Please email [email protected] for further information and accessing the ROMS-NWA bottom temperature data.
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chapters/conceptualmodels.Rmd

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**Indicator category**: Synthesis of published information, Extensive analysis; not yet published
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**Contributor(s)**: Sarah Gaichas, Patricia Clay, Geret DePiper, Gavin Fay, Michael Fogarty, Paula Fratantoni, Robert Gamble, Sean Lucey, Charles Perretti, Patricia Pinto da Silva, Vincent Saba, Laurel Smith, Jamie Tam, Steve Traynor, Robert Wildermuth
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**Contributor(s)**: Sarah Gaichas, Patricia Clay, Geret DePiper, Gavin Fay, Michael Fogarty, Paula Fratantoni, Robert Gamble, Sean Lucey, Charles Perretti, Patricia Pinto da Silva, Vincent Saba, Jamie Tam, Steve Traynor, Robert Wildermuth
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**Data steward**: Sarah Gaichas, <[email protected]>
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chapters/condition.Rmd

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**Indicator category**: Database pull with analysis
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**Contributor(s)**: Laurel Smith
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**Contributor(s)**: NOAA EDAB
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**Data steward**: Laurel Smith, <laurel.smith@noaa.gov>
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**Data steward**: SOE Leads, <nefsc.soe.leads@noaa.gov>
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**Point of contact**: Laurel Smith, <laurel.smith@noaa.gov>
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**Point of contact**: SOE Leads, <nefsc.soe.leads@noaa.gov>
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**Public availability statement**: NEFSC survey data used in these analyses are available upon request (see [BTS metadata](https://inport.nmfs.noaa.gov/inport/item/22560) for access procedures). Derived condition data are available [here](https://github.com/Laurels1/Condition/tree/master/data).
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chapters/engagement.Rmd

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# Community Social Vulnerability Indicators (CSVI) {#engagement}
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**Description**: The data presented here are 2022 environmental justice indicators in top commercial and top recreational communities in Mid-Atlantic and New England regions, respectively.
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**Description**: The data presented here are 2022 social vulnerability indicators in top commercial and top recreational communities in Mid-Atlantic and New England regions, respectively.
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**Found in**: State of the Ecosystem - Gulf of Maine & Georges Bank (2018+), State of the Ecosystem - Mid-Atlantic (2018+), State of the Ecosystem - Indicator Catalog (2024+)
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chapters/habitat_diversity.Rmd

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**Contributor(s)**: Chris Haak <[email protected]>
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**Data steward**: Laurel Smith <laurel.smith@noaa.gov>
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**Data steward**: SOE Leads <nefsc.soe.leads@noaa.gov>
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**Point of contact**: Laurel Smith <laurel.smith@noaa.gov>
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**Point of contact**: SOE Leads <nefsc.soe.leads@noaa.gov>
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**Public availability statement**: This analysis is based on NEFSC bottom trawl survey data which are publicly available. Please reached out to Laurel Smith with questions.
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**Public availability statement**: This analysis is based on NEFSC bottom trawl survey data which are publicly available. Please reached out to <[email protected]> with questions.
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2020
## Methods

chapters/hms_stock_status.Rmd

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### Data analysis
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Stock status information is compiled annually from stock assessments completed by the International Commission for the Conservation of Atlantic Tunas (ICCAT) (tunas, sharks, swordfish) and the Southeast Data Assessment and Review (SEDAR) (Atlantic HMS sharks). Species with a range of uncertainty estimates for F/Fmsy and B/Bmsy and assessments completed very recently may not be included in Stock Smart queries. We selected the most precautionary metrics for Fyr/Fmsy (high-end) and Byr/Bmsy (low-end).
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Stock status information was plotted on a Kobe chart using modified code from the 2021 SOE Technical Documentation. Although Gulf of Mexico stock information is provided, we only plotted Atlantic stocks to maintain relevance. Atlantic blacknose shark was considered an outlier due to an Fyr/Fmsy = 22.53. The y-axis is not scaled to include this species in the Kobe plot, so it was added in the top left segment of the box with the Fyr/Fmsy. The grey box lists species with unknown F/Fmsy and/or B/Bmsy.
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Stock status information was plotted on a Kobe chart using modified code from the 2021 SOE Technical Documentation. Although additional stock information is provided, we only plotted Atlantic stocks to maintain relevance. Atlantic blacknose shark was considered an outlier due to an Fyr/Fmsy = 22.53. The y-axis is not scaled to include this species in the Kobe plot, so it was added in the top left segment of the box with the Fyr/Fmsy. The grey box lists species with unknown F/Fmsy and/or B/Bmsy.
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The table below shows naming conventions used in the plot.

chapters/stom_fullness.Rmd

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**Indicator category**: Database pull with analysis
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**Contributor(s)**: Laurel Smith
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**Contributor(s)**: NOAA EDAB
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**Data steward**: Kimberly Bastille <[email protected]>
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