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makePackage
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makePackage
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/Users/nychkaadmin/Desktop/R/R-devel/bin/R CMD build --force fields
/Users/nychkaadmin/Desktop/R/R-devel/bin/R CMD check --as-cran fields_9.8-1.tar.gz
# Now check \dontrun exmaples
cd fields.Rcheck
sed -e "s/##D/ /" fields-ex.R > temp.r
sed -e "s/library('fields')/library('fields', lib.loc='.')/" temp.r > all-ex.R
#
R --save < all-ex.R > all-ex.Rout
# take a look
grep FAILED all-ex.Rout
grep Warning all-ex.Rout
rm all-ex.Rout temp.R fields-Ex.pdf
# then
cp fields.Rcheck/tests/Krig.Z.test.Rout fields/tests/Krig.Z.test.Rout.save
cp fields.Rcheck/tests/Krig.se.W.Rout fields/tests/Krig.se.W.Rout.save
cp fields.Rcheck/tests/Krig.se.grid.test.Rout fields/tests/Krig.se.grid.test.Rout.save
cp fields.Rcheck/tests/Krig.se.test.Rout fields/tests/Krig.se.test.Rout.save
cp fields.Rcheck/tests/Krig.test.Rout fields/tests/Krig.test.Rout.save
cp fields.Rcheck/tests/Krig.test.W.Rout fields/tests/Krig.test.W.Rout.save
cp fields.Rcheck/tests/KrigGCVREML.test.Rout fields/tests/KrigGCVREML.test.Rout.save
cp fields.Rcheck/tests/Likelihood.test.Rout fields/tests/Likelihood.test.Rout.save
cp fields.Rcheck/tests/REMLest.test.Rout fields/tests/REMLest.test.Rout.save
cp fields.Rcheck/tests/Tps.test.Rout fields/tests/Tps.test.Rout.save
cp fields.Rcheck/tests/fastTpsPredict.test.Rout fields/tests/fastTpsPredict.test.Rout.save
cp fields.Rcheck/tests/Wend.test.Rout fields/tests/Wend.test.Rout.save
cp fields.Rcheck/tests/cov.test.Rout fields/tests/cov.test.Rout.save
cp fields.Rcheck/tests/derivative.test.Rout fields/tests/derivative.test.Rout.save
cp fields.Rcheck/tests/diag.multiply.test.Rout fields/tests/diag.multiply.test.Rout.save
cp fields.Rcheck/tests/diagonal2.test.Rout fields/tests/diagonal2.test.Rout.save
cp fields.Rcheck/tests/evlpoly.test.Rout fields/tests/evlpoly.test.Rout.save
cp fields.Rcheck/tests/mKrig.Z.Rout fields/tests/mKrig.Z.Rout.save
cp fields.Rcheck/tests/mKrig.parameters.test.Rout fields/tests/mKrig.parameters.test.Rout.save
cp fields.Rcheck/tests/mKrig.se.test.Rout fields/tests/mKrig.se.test.Rout.save
cp fields.Rcheck/tests/mKrig.test.Rout fields/tests/mKrig.test.Rout.save
cp fields.Rcheck/tests/misc.test.Rout fields/tests/misc.test.Rout.save
cp fields.Rcheck/tests/spam.test.Rout fields/tests/spam.test.Rout.save
cp fields.Rcheck/tests/sreg.test.Rout fields/tests/sreg.test.Rout.save
cp fields.Rcheck/tests/vgram.test.Rout fields/tests/vgram.test.Rout.save
cp fields.Rcheck/tests/cov.test2.Rout fields/tests/cov.test2.Rout.save
cp fields.Rcheck/tests/mKrigMLETest.Rout fields/tests/mKrigMLETest.Rout.save
cp fields.Rcheck/tests/mKrigREMLTest.Rout fields/tests/mKrigREMLTest.Rout.save
cp fields.Rcheck/tests/SEFixedParameters.Rout fields/tests/SEFixedParameters.Rout.save
cp fields.Rcheck/tests/offGridWeights.test.Rout fields/tests/offGridWeights.test.Rout.save
#Adding help files
R CMD INSTALL --library=lib --html fields_12.6.tar.gz
cp lib/fields/html/* currentHelp
### looping through files to make global changes
# Comparing directories
set DIR1 = /Users/nychka/Home/Repositories/fields
foreach i ( *.R )
echo $i
cp $i temp.R
sed s/sigma/tau/g temp.R > $i
end
rm temp.R
foreach i ( *.R )
echo $i
cp $i temp.R
sed s/theta/aRange/g temp.R > $i
end
foreach i ( *.Rd )
echo $i
cp $i temp.Rd
sed s/theta/aRange/g temp.Rd > $i
end
rm temp.Rd
foreach i ( *.R )
echo $i
cp $i temp.R
sed s/shat/tauHat/g temp.R > $i
end
rm temp.R
foreach i ( *.Rd )
echo $i
cp $i temp.Rd
sed s/sigma/tau/g temp.Rd > $i
end
rm temp.Rd
foreach i ( *.Rd )
echo $i
cp $i temp.Rd
sed s/shat/tauHat/g temp.Rd > $i
end
rm temp.Rd
foreach i ( *.R )
echo $i
cp $i temp.R
sed s/rho/sigma/g temp.R > $i
end
rm temp.R
foreach i ( *.Rd )
echo $i
cp $i temp.Rd
sed s/rho/sigma/g temp.Rd > $i
end
rm temp.Rd
mKrigMLEJoint
mKrigMLEJoint
mKrigMLEGrid
foreach i ( *.R )
echo $i
cp $i temp.R
sed s/d\.coef/beta/g temp.R > $i
end
rm temp.R
cp fields.Rcheck/tests/Krig.Z.test.Rout fieldsBeta/tests/Krig.Z.test.Rout.save
cp fields.Rcheck/tests/Krig.se.W.Rout fieldsBeta/tests/Krig.se.W.Rout.save
cp fields.Rcheck/tests/Krig.se.grid.test.Rout fieldsBeta/tests/Krig.se.grid.test.Rout.save
cp fields.Rcheck/tests/Krig.se.test.Rout fieldsBeta/tests/Krig.se.test.Rout.save
cp fields.Rcheck/tests/Krig.test.Rout fieldsBeta/tests/Krig.test.Rout.save
cp fields.Rcheck/tests/Krig.test.W.Rout fieldsBeta/tests/Krig.test.W.Rout.save
cp fields.Rcheck/tests/KrigGCVREML.test.Rout fieldsBeta/tests/KrigGCVREML.test.Rout.save
cp fields.Rcheck/tests/Likelihood.test.Rout fieldsBeta/tests/Likelihood.test.Rout.save
cp fields.Rcheck/tests/REMLest.test.Rout fieldsBeta/tests/REMLest.test.Rout.save
cp fields.Rcheck/tests/Tps.test.Rout fieldsBeta/tests/Tps.test.Rout.save
cp fields.Rcheck/tests/fastTpsPredict.test.Rout fieldsBeta/tests/fastTpsPredict.test.Rout.save
cp fields.Rcheck/tests/mKrig.MLE.test.Rout fieldsBeta/tests/mKrig.MLE.test.Rout.save
cp fields.Rcheck/tests/Wend.test.Rout fieldsBeta/tests/Wend.test.Rout.save
cp fields.Rcheck/tests/cov.test.Rout fieldsBeta/tests/cov.test.Rout.save
cp fields.Rcheck/tests/derivative.test.Rout fieldsBeta/tests/derivative.test.Rout.save
cp fields.Rcheck/tests/diag.multiply.test.Rout fieldsBeta/tests/diag.multiply.test.Rout.save
cp fields.Rcheck/tests/diagonal2.test.Rout fieldsBeta/tests/diagonal2.test.Rout.save
cp fields.Rcheck/tests/evlpoly.test.Rout fieldsBeta/tests/evlpoly.test.Rout.save
cp fields.Rcheck/tests/mKrig.Z.Rout fieldsBeta/tests/mKrig.Z.Rout.save
cp fields.Rcheck/tests/mKrig.parameters.test.Rout fieldsBeta/tests/mKrig.parameters.test.Rout.save
cp fields.Rcheck/tests/mKrig.se.test.Rout fieldsBeta/tests/mKrig.se.test.Rout.save
cp fields.Rcheck/tests/mKrig.test.Rout fieldsBeta/tests/mKrig.test.Rout.save
cp fields.Rcheck/tests/misc.test.Rout fieldsBeta/tests/misc.test.Rout.save
cp fields.Rcheck/tests/spam.test.Rout fieldsBeta/tests/spam.test.Rout.save
cp fields.Rcheck/tests/sreg.test.Rout fieldsBeta/tests/sreg.test.Rout.save
cp fields.Rcheck/tests/vgram.test.Rout fieldsBeta/tests/vgram.test.Rout.save
cp fields.Rcheck/tests/cov.test2.Rout fieldsBeta/tests/cov.test2.Rout.save
cp fields.Rcheck/tests/mKrigMLETest.Rout fieldsBeta/tests/mKrigMLETest.Rout.save
cp fields.Rcheck/tests/mKrigREMLTest.Rout fieldsBeta/tests/mKrigREMLTest.Rout.save
cp fields.Rcheck/tests/SEFixedParameters.Rout fieldsBeta/tests/SEFixedParameters.Rout.save