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lines changed Original file line number Diff line number Diff line change @@ -139,9 +139,9 @@ Secondly have look at the availabe AGAT biocontainers at [quay.io](https://quay.
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Then:
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```
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# get the chosen AGAT container version
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- docker pull quay.io/biocontainers/agat:0.8.0--pl5262hdfd78af_0
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+ docker pull quay.io/biocontainers/agat:1.4.2--pl5321hdfd78af_0
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# use an AGAT's tool e.g. agat_convert_sp_gxf2gxf.pl
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- docker run quay.io/biocontainers/agat:0.8.0--pl5262hdfd78af_0 agat_convert_sp_gxf2gxf.pl --help
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+ docker run quay.io/biocontainers/agat:1.4.2--pl5321hdfd78af_0 agat_convert_sp_gxf2gxf.pl --help
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```
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</details >
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@@ -155,9 +155,9 @@ Secondly have look at the availabe AGAT biocontainers at [quay.io](https://quay.
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Then:
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```
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# get the chosen AGAT container version
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- singularity pull docker://quay.io/biocontainers/agat:1.0.0 --pl5321hdfd78af_0
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+ singularity pull docker://quay.io/biocontainers/agat:1.4.2 --pl5321hdfd78af_0
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# run the container
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- singularity run agat_1.0.0 --pl5321hdfd78af_0.sif
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+ singularity run agat_1.4.2 --pl5321hdfd78af_0.sif
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```
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You are now in the container. You can use an AGAT's tool e.g. agat_convert_sp_gxf2gxf.pl doing
You can’t perform that action at this time.
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